CuGenDBv2

Gene ID	Cucsat.G6557
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	recQ-mediated genome instability protein 2
Genome location	ctg1451:66388..69233
RNA-Seq Expression	Cucsat.G6557
Synteny	Cucsat.G6557
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0009555 - pollen development (biological process) GO:0033045 - regulation of sister chromatid segregation (biological process) GO:0043007 - maintenance of rDNA (biological process) GO:0050794 - regulation of cellular process (biological process) GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process) GO:0005622 - intracellular (cellular component) GO:0005829 - cytosol (cellular component) GO:0016607 - nuclear speck (cellular component)
InterPro domains	IPR032245 - RecQ-mediated genome instability protein 2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139456.1 recQ-mediated genome instability protein 2 isoform X2 [Cucumis sativus]

3.73e-53

76.8

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLG                             MYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYKLFYEPLVEDFL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]

5.37e-48

70.4

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDD TGTVELSL R+FLLRPWSLG                             MYVMVVGAFLFRTNE PFI VHKI+DLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYK+FYEPLVE+FL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

XP_022152884.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]

4.05e-40

60.8

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDK N +L+LDD TGTVELSLSRDF LRPW+LG                             MYVMVVGAF+ R NE P I VHKI+DLS+ P+
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYK+FYEPL+E+FL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

XP_031736186.1 recQ-mediated genome instability protein 2 isoform X1 [Cucumis sativus]

5.07e-81

99.2

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFF CFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYKLFYEPLVEDFL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]

1.24e-41

63.71

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QG LVSVDKEN KLILDD TGTVELSLSRDF LRPW LG                             MYVMVVGAF+FRTNE P I VHKI+DLSK P+
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDF
        REAMWYLEV+EAYK+FYEPL+E+F
Subjt:  REAMWYLEVMEAYKLFYEPLVEDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVL5 Uncharacterized protein

1.80e-53

76.8

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLG                             MYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYKLFYEPLVEDFL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

A0A1S3CGI5 recQ-mediated genome instability protein 2

2.60e-48

70.4

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDD TGTVELSL R+FLLRPWSLG                             MYVMVVGAFLFRTNE PFI VHKI+DLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYK+FYEPLVE+FL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

A0A5A7UD07 RecQ-mediated genome instability protein 2

2.60e-48

70.4

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDKENGKLILDD TGTVELSL R+FLLRPWSLG                             MYVMVVGAFLFRTNE PFI VHKI+DLSKSPN
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYK+FYEPLVE+FL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

A0A6J1DF83 recQ-mediated genome instability protein 2 isoform X1

1.96e-40

60.8

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILVSVDK N +L+LDD TGTVELSLSRDF LRPW+LG                             MYVMVVGAF+ R NE P I VHKI+DLS+ P+
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDFL
        REAMWYLEVMEAYK+FYEPL+E+FL
Subjt:  REAMWYLEVMEAYKLFYEPLVEDFL

A0A6J1I0C8 uncharacterized protein LOC111469342

4.51e-39

61.29

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Query:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN
        QGILV VD++NGKLILDD TGTVELSLS DF  RPWSLG                             MYVMVVGA++ RTNE   I VHKI+DLSK P 
Subjt:  QGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPN

Query:  REAMWYLEVMEAYKLFYEPLVEDF
        REAMWYLEVMEAYK+FYEPLVE+F
Subjt:  REAMWYLEVMEAYKLFYEPLVEDF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G08390.1 unknown protein

3.4e-24

46.03

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Query:  QGILVSVDKENGK--LILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKS
        QG+LV      G   L+LDD TG +EL L+ DF LR W                              SGMYVMVVG +  RT ++P + VHK++DLS S
Subjt:  QGILVSVDKENGK--LILDDATGTVELSLSRDFLLRPWSLGIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKS

Query:  PNREAMWYLEVMEAYKLFYEPLVEDF
        P+REAMWYLEVM+AY+LFYEPL+++F
Subjt:  PNREAMWYLEVMEAYKLFYEPLVEDF

Sequences

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CDS sequence

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AGAGCAATTTTGGAAGAAGACGGACATGGACTACAGCTTAGGAGCCTTGAAGCTTCTATGCCGGCAGCTCAAAGACGCCCGCGGAACTCCGTCCCACCCCACCGCCAATC
TTGGTGGCATTCTCTTCCAACGCGCCTGGCTTCAGGTCCTCTCTTCAACATCCTTCATTTCTCCCCCTTTCTCACAATCCTTCTCTCTAATCAACAGTTCTCTCACCAGG
GGATTTTGGTCTCCGTCGACAAGGAAAATGGTAAATTGATTCTCGATGACGCCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGACTTCCTTCTCCGCCCTTGGAGTCTC
GGTATTTTCCCTACTACTTCCCCGTTCTCTTTTTTGCTGCTGCATTTTGAGTTGGATTCTCTCGCTTTCTTTGTTTGTTTTTGTTCAGGGATGTATGTGATGGTTGTTGG
CGCTTTTCTCTTTCGGACGAATGAACTGCCCTTTATTGTGGTCCACAAGATTATTGATCTTTCAAAGTCTCCTAATCGAGAGGCAATGTGGTACCTTGAAGTCATGGAAG
CATACAAATTGTTCTATGAACCTCTTGTCGAAGACTTTTTGTAA

mRNA sequence

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Protein sequence

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RAILEEDGHGLQLRSLEASMPAAQRRPRNSVPPHRQSWWHSLPTRLASGPLFNILHFSPFLTILLSNQQFSHQGILVSVDKENGKLILDDATGTVELSLSRDFLLRPWSL
GIFPTTSPFSFLLLHFELDSLAFFVCFCSGMYVMVVGAFLFRTNELPFIVVHKIIDLSKSPNREAMWYLEVMEAYKLFYEPLVEDFL

Cucsat.G6557 (gene) of Cucumber (B10) v3 genome