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Cucsat.G6656 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G6656
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionprotein RADIALIS-like 1
Genome locationctg1502:486401..487161
RNA-Seq ExpressionCucsat.G6656
SyntenyCucsat.G6656
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036174.1 protein RADIALIS-like 2 [Cucumis melo var. makuwa]2.76e-5596.55Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYP TSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.76e-5596.55Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYP TSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

XP_011659078.1 protein RADIALIS-like 2 [Cucumis sativus]4.49e-5697.7Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHDVKHIESGNVPFPYP TSSNDDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]1.21e-4687.36Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]6.24e-4990.8Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWT MQNKTFE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYP  SS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 21.34e-5596.55Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYP TSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

A0A5D3D8F6 Protein RADIALIS-like 21.34e-5596.55Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYP TSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

A0A6J1C6U4 protein RADIALIS-like 12.75e-4381.61Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSS GS+AWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY +TS++DD P KRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

A0A6J1GK35 protein RADIALIS-like 15.85e-4787.36Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

A0A6J1I517 protein RADIALIS-like 12.38e-4686.21Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG
        MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAK VGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.3e-2265.79Show/hide
Query:  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTS
        +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP  +TS
Subjt:  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTS

Q1A173 Protein RADIALIS-like 63.3e-1861.84Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT
        MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P  KT
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT

Q6NNN0 Protein RADIALIS-like 32.9e-1957.5Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSND
        MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ DV  IESG  P P  +++ N+
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSND

Q8GW75 Protein RADIALIS-like 51.5e-1860.53Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT
        MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P  KT
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT

Q9SIJ5 Protein RADIALIS-like 21.4e-2161.18Show/hide
Query:  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPKTSSNDDLPRKR
        SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y  T+ N +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPKTSSNDDLPRKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.0e-1960.53Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT
        MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P  KT
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT

AT1G75250.1 RAD-like 62.3e-1961.84Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT
        MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P  KT
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT

AT1G75250.2 RAD-like 62.3e-1961.84Show/hide
Query:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT
        MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P  KT
Subjt:  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKT

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2261.18Show/hide
Query:  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPKTSSNDDLPRKR
        SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y  T+ N +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPKTSSNDDLPRKR

AT4G39250.1 RAD-like 14.5e-2365.79Show/hide
Query:  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTS
        +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP  +TS
Subjt:  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAA
CAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATT
ACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA
mRNA sequenceShow/hide mRNA sequence
CTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAA
CAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATT
ACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA
Protein sequenceShow/hide protein sequence
LFPKPISFVLAIQSSILTKVMASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG