CuGenDBv2

Gene ID	Cucsat.G6770
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	54S ribosomal protein L37, mitochondrial-like
Genome location	ctg1502:2149580..2151838
RNA-Seq Expression	Cucsat.G6770
Synteny	Cucsat.G6770
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR013870 - Ribosomal protein L37, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]

3.54e-87

99.28

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Query:  MPCGKKKNMSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHP
        MPCGKKKNMSQ+RLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHP
Subjt:  MPCGKKKNMSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHP

Query:  PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
        PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  PLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_004144674.3 39S ribosomal protein L54, mitochondrial [Cucumis sativus]

2.79e-81

99.24

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQ+RLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]

1.12e-76

93.13

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]

3.65e-81

92.2

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Query:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK
        MPCGKKK M  SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+K
Subjt:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK

Query:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
        HPPLSELRRKNAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_038883606.1 39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]

1.90e-72

87.5

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Query:  GKKKNMSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLS
        GKK  MSQ+RLFRR+I V+SK+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLS
Subjt:  GKKKNMSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLS

Query:  ELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
        ELRRKN E+LPY DLKRF+KLDTRA+IKENNS KAK
Subjt:  ELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYS4 Uncharacterized protein

9.49e-82

100

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X2

5.41e-77

93.13

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X1

1.77e-81

92.2

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Query:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK
        MPCGKKK M  SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+K
Subjt:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK

Query:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
        HPPLSELRRKNAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A5D3CXE8 39S ribosomal protein L54

1.77e-81

92.2

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Query:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK
        MPCGKKK M  SQ+R FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+K
Subjt:  MPCGKKKNM--SQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK

Query:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK
        HPPLSELRRKNAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  HPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like

5.50e-63

80.92

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQ+RLFRR+++ ++K+LI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTTVVGANILKEGADPK+MADSEYP WLW L++K P LSELRRK
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        +A++LPY DLKRF+KLDTRARIKENNS KAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

SwissProt top hits

e value

%identity

Alignment

Q9CPW3 39S ribosomal protein L54, mitochondrial

1.1e-05

38.54

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Query:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSI
        KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  +N  PP  +L     ES  Y  L R   +    R+ +N  +
Subjt:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSI

Arabidopsis top hits

e value

%identity

Alignment

AT3G01740.1 Mitochondrial ribosomal protein L37

5.3e-40

65.15

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR
        M+++ L R +   SSK++++    RTF AA  K+KKG KGG A+DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLW+LL+K P LSELRR
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR

Query:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK
        KN E+LPY DLKRF+KLDTR +IKENNSIKAK
Subjt:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK

AT5G14290.1 Mitochondrial ribosomal protein L37

4.3e-34

59.09

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Query:  MSQVRLFRRNIIVSSKNLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR
        M+ +R+F  + I  SK++++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ VV AN LK+G DPKI+ +S++P +LW+LL+K P LSELRR
Subjt:  MSQVRLFRRNIIVSSKNLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR

Query:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK
        KN E+L + DLKRF+KLDTRARIKEN+SIKAK
Subjt:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK

Sequences

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CDS sequence

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ATGCCCTGTGGGAAAAAGAAAAATATGAGCCAAGTTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGC
CGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTC
TCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCT
GAAAGTCTTCCCTACGCAGATCTCAAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA

mRNA sequence

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Protein sequence

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MPCGKKKNMSQVRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNA
ESLPYADLKRFIKLDTRARIKENNSIKAK

Cucsat.G6770 (gene) of Cucumber (B10) v3 genome