; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G6797 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G6797
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor SC35-like
Genome locationctg1522:16389..20216
RNA-Seq ExpressionCucsat.G6797
SyntenyCucsat.G6797
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064834.1 serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]1.44e-15595.31Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD
        SPTRHSPDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDAD
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD

XP_008445340.1 PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]3.40e-15695.33Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_011649457.1 serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]3.71e-16097.28Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_031736561.1 serine/arginine-rich splicing factor SC35 isoform X1 [Cucumis sativus]5.49e-16899.61Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDRRFYTDFSM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

XP_038884086.1 serine/arginine-rich splicing factor SC35-like [Benincasa hispida]2.19e-15294.16Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTR SPDTRRSISPR+TPP R RSDDEHSP  DNGS DDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

TrEMBL top hitse value%identityAlignment
A0A0A0LQG4 RRM domain-containing protein1.80e-16097.28Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A1S3BCG4 serine/arginine-rich splicing factor SC35-like1.65e-15695.33Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SPTRHSPDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A5A7VC44 Serine/arginine-rich splicing factor SC35-like6.95e-15695.31Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKGRVMESSSKTRGRSRSRSPRSRHRDD+RDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDD+RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD
        SPTRHSPDTRRSISPR+TPPSR RSD+E SPKGDNGSPDDKPVDSRSPSPARSDAD
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDAD

A0A6J1HDE4 serine/arginine-rich splicing factor SC35-like isoform X11.68e-14991.83Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKG+VMESSSK RGRSRSRSPR RHRDD+RDRDYRRRSRSRSRER+DRDRPHRSERERYRSRSRSASPDR KDR RGRDD +RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SP RHSPDTRRSISPR+TPPSR RSDDEHSP+ DNGSPDDKPVDSRSPSPA+SDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

A0A6J1K6Z8 serine/arginine-rich splicing factor SC35-like isoform X15.87e-15091.83Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM
        IRKG+VMESSSK RGRSRSRSPR RHRDD+RDRDYRRRSRSRSRER+DRDRPHRSERERYRSRSRSASPDR KDRRRGRDD +RRSASHSDR      SM
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSM

Query:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
        SP RHSPDTRRSISPR+TPPSR RSD+EHSP+ DNGSPDDKPVDSRSPSPA+SDADE
Subjt:  SPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 21.2e-2645.91Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS
        R+G        +    RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S  R  +  S  
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS

Query:  PT--RHSPDTRRSISPRKTP
        PT  R S    RS SP K+P
Subjt:  PT--RHSPDTRRSISPRKTP

Q01130 Serine/arginine-rich splicing factor 27.8e-2645.5Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S  R     S S
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS

Query:  P----TRHSPDTRRSISPRKTP
        P     R S    RS SP K+P
Subjt:  P----TRHSPDTRRSISPRKTP

Q3MHR5 Serine/arginine-rich splicing factor 27.8e-2645.5Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S  R     S S
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS

Query:  P----TRHSPDTRRSISPRKTP
        P     R S    RS SP K+P
Subjt:  P----TRHSPDTRRSISPRKTP

Q62093 Serine/arginine-rich splicing factor 27.8e-2645.5Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS
        R+G             RSRSPR R R   R R    RSRSRSR RY R +     R R RSRSRS S  RS  R + +     RS S S  R     S S
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMS

Query:  P----TRHSPDTRRSISPRKTP
        P     R S    RS SP K+P
Subjt:  P----TRHSPDTRRSISPRKTP

Q9FMG4 Serine/arginine-rich splicing factor SC354.2e-6460.65Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D++ RS S S        S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 331.2e-1036.98Show/hide
Query:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR
        SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   +DG +L GRE+ V FA+     E  +K   M +  +  GR
Subjt:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR

Query:  ------------SRSRSPRSRH-RDDHRDRDY-----RR---RSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFY
                    SRSRSP  R  R   R  DY     RR   RS S   ERYD  R +        SR RS +P R K   R      RRS S S RR  
Subjt:  ------------SRSRSPRSRH-RDDHRDRDY-----RR---RSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFY

Query:  TDFSMSPTRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE
           S SP   SP   RS+SPR++    P R+R     SP+    S   +P  SRS SP     DE
Subjt:  TDFSMSPTRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE

AT3G13570.1 SC35-like splicing factor 30A1.9e-1135.06Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK
        FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F+++    +A +A  ++DG +L GRE+ V FA+   N +K  +
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK

Query:  GRVMESSSKT-RGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMSP
         R  +   ++ R + R RSP    R        RR  RSRSR R     P +      R +SRS SP   +DRR  ++    RS  H+  R  +      
Subjt:  GRVMESSSKT-RGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMSP

Query:  TRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSP
          HS   RRS+SPRK     P +ARS           SP   P  SRSP+P
Subjt:  TRHSPDTRRSISPRKT---PPSRARSDDEHSPKGDNGSPDDKPVDSRSPSP

AT5G18810.1 SC35-like splicing factor 285.6e-1132.42Show/hide
Query:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRG--
        LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ +++ +++ GREI + FA+   N +  ++ R    +S   G  
Subjt:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRG--

Query:  -RSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYT
         R+  RSPR R+R   R R   RR    S+ R D         + Y  R RS S  RS   R  R+   R   S  + R  T
Subjt:  -RSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYT

AT5G64200.1 ortholog of human splicing factor SC353.0e-6560.65Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D++ RS S S        S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS

AT5G64200.2 ortholog of human splicing factor SC353.0e-6560.65Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR
        I KGRV+E    S ++R RS                    RSRSPR R RDD+R++DYR+RSRSRS +R  R+R    +R+ R R+RSRSASPD  K R 
Subjt:  IRKGRVME---SSSKTRGRS--------------------RSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERE-RYRSRSRSASPDRSKDRR

Query:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS
        RGR D++ RS S S        S SP R SP   RS SP+KT P+R  S D+ S             + RSPSP RS
Subjt:  RGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPPSRARSDDEHSPKGDNGSPDDKPVDSRSPSPARS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACTACCGCCGATGATCTTTACCCCCTTTTCGA
TAAGTACGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAA
TTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATTCGTAAAGGGAGAGTAATGGAATCATCT
TCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATA
TGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATC
GACGTAGTGCTAGCCACTCTGATAGAAGATTCTATACTGATTTCAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCA
TCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGA
GTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCACTTTGGAAGATCCGGTCCTCCCGATATCAGAGATACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACTACCGCCGATGATCTTTACCCCCTTTTCGA
TAAGTACGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCGCGAGGATTTGCGTTTGTTCGATATAAGTACGCGGATGAAGCACAGAAGGCAA
TTGATAAGCTTGATGGACGAATGTTGGATGGCAGAGAAATTATGGTTCAATTTGCTAAGTATGGTCCTAATGCTGAGAAAATTCGTAAAGGGAGAGTAATGGAATCATCT
TCGAAGACAAGGGGAAGGTCAAGAAGCCGCAGTCCACGTTCAAGGCACCGTGATGACCATAGGGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGTGAGAGATA
TGATCGTGATAGACCCCACAGAAGTGAGAGAGAGCGCTATCGCAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATC
GACGTAGTGCTAGCCACTCTGATAGAAGATTCTATACTGATTTCAGCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAAGACACCGCCA
TCTAGGGCTAGAAGCGACGATGAACACTCACCAAAGGGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGTAGTCCATCTCCTGCTAGATCCGATGCTGATGA
GTGA
Protein sequenceShow/hide protein sequence
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS
SKTRGRSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRRFYTDFSMSPTRHSPDTRRSISPRKTPP
SRARSDDEHSPKGDNGSPDDKPVDSRSPSPARSDADE