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Cucsat.G6914 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G6914
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationctg1522:310504..311568
RNA-Seq ExpressionCucsat.G6914
SyntenyCucsat.G6914
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652040.1 hypothetical protein Csa_018608 [Cucumis sativus]6.25e-4886.36Show/hide
Query:  IPVRCFT------CGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVW
        IP  CF       C  VIGNKWDHYLD+LQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVW
Subjt:  IPVRCFT------CGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVW

KAF7031339.1 hypothetical protein CFC21_042683 [Triticum aestivum]2.78e-1550Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRR
        MIIPVRCFTCGKVIGNKWDHYLD+LQADY+EG        +             LI  L++YN +    +  P+RR
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRR

KHN08995.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Glycine soja]2.31e-1569.23Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYN
        MIIPVRCFTCGKVIGNKWD YLD+LQADYSEG++  T      LI  L++YN
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYN

KMZ72522.1 DNA-directed RNA polymerase subunit 10-like protein [Zostera marina]1.52e-1656.52Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA
        MIIPVRCFTCGKVIGNKWD+YLD+LQADYSEG++  T      LI  L++YN  +        + DP+A
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]4.66e-1596.88Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWDHYLD+LQADYSEG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

TrEMBL top hitse value%identityAlignment
A0A0A9RSE3 Uncharacterized protein1.15e-1563.16Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHT
        MIIPVRCFTCGKVIGNKWD YLD+LQADY+EG++  T      LI  L++YN  + T
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHT

A0A0K9PW88 DNA-directed RNA polymerase subunit 10-like protein7.35e-1756.52Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA
        MIIPVRCFTCGKVIGNKWD+YLD+LQADYSEG++  T      LI  L++YN  +        + DP+A
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA

A0A3B6FVD0 Uncharacterized protein1.35e-1550Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRR
        MIIPVRCFTCGKVIGNKWDHYLD+LQADY+EG        +             LI  L++YN +    +  P+RR
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRR

A0A6J1KEH3 DNA-directed RNA polymerase subunit 10-like protein2.25e-1596.88Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWDHYLD+LQADYSEG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

T1MEG7 Uncharacterized protein8.33e-1691.18Show/hide
Query:  AKMIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        +KMIIPVRCFTCGKVIGNKWDHYLD+LQADY+EG
Subjt:  AKMIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

SwissProt top hitse value%identityAlignment
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC55.3e-1187.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWD YLD+LQ DY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc52.6e-1084.38Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWD YL +LQ DY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 103.1e-1187.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWD YLD+LQ DY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein5.3e-1184.38Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MI+PVRCFTCGKVIGNKWD YL++LQADY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC57.7e-1078.12Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIP+RCFTCGKVIGNKW+ YL +LQA+Y+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit2.2e-1287.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MIIPVRCFTCGKVIGNKWD YLD+LQ DY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG

AT1G61700.1 RNA polymerases N / 8 kDa subunit3.8e-1284.38Show/hide
Query:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG
        MI+PVRCFTCGKVIGNKWD YL++LQADY+EG
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDILQADYSEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTGATTGGAAACAA
GTGGGATCATTACCTTGATATTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCC
AAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGAC
GAATGCTCATGA
mRNA sequenceShow/hide mRNA sequence
GGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCGGGAAGGTGATTGGAAACAA
GTGGGATCATTACCTTGATATTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTACAACATCC
AAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGTTCGCTACTGCTGTAGAC
GAATGCTCATGA
Protein sequenceShow/hide protein sequence
GVKPWLGSRHVGLCRKQKAKMIIPVRCFTCGKVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWFATAVD
ECS