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Cucsat.G7025 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7025
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionIsopentenyl-diphosphate Delta-isomerase
Genome locationctg1523:502019..505606
RNA-Seq ExpressionCucsat.G7025
SyntenyCucsat.G7025
Gene Ontology termsGO:0009240 - isopentenyl diphosphate biosynthetic process (biological process)
GO:0015995 - chlorophyll biosynthetic process (biological process)
GO:0050992 - dimethylallyl diphosphate biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR011876 - Isopentenyl-diphosphate delta-isomerase, type 1
IPR015797 - NUDIX hydrolase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038257.1 isopentenyl-diphosphate Delta-isomerase I [Cucumis melo var. makuwa]1.31e-5894.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

XP_004139102.1 isopentenyl-diphosphate Delta-isomerase I [Cucumis sativus]1.98e-6095.88Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

XP_008443691.2 PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Cucumis melo]1.31e-5894.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

XP_023516107.1 isopentenyl-diphosphate Delta-isomerase I-like [Cucurbita pepo subsp. pepo]4.77e-7087.9Show/hide
Query:  PSFCIKKTFKIYHVCSIICNSHLPCIDLEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCC
        PSF + +TFKI H CSII  SH+P I LEF+ RCILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCC
Subjt:  PSFCIKKTFKIYHVCSIICNSHLPCIDLEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCC

Query:  SHPLYRESELIEEDALGARNAAQK
        SHPLYRESELIEEDALGARNAAQ+
Subjt:  SHPLYRESELIEEDALGARNAAQK

XP_023516108.1 isopentenyl-diphosphate Delta-isomerase I isoform X1 [Cucurbita pepo subsp. pepo]1.86e-5894.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

TrEMBL top hitse value%identityAlignment
A0A0A0M046 Isopentenyl-diphosphate Delta-isomerase9.61e-6195.88Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

A0A1S3B9E9 Isopentenyl-diphosphate Delta-isomerase6.35e-5994.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

A0A5A7T9F7 Isopentenyl-diphosphate Delta-isomerase6.35e-5994.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

A0A6J1H811 Isopentenyl-diphosphate Delta-isomerase9.00e-5994.85Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

A0A6J1JMU3 Isopentenyl-diphosphate Delta-isomerase2.56e-5893.81Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK
        L F D CILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIE+DALGARNAAQ+
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQK

SwissProt top hitse value%identityAlignment
O48964 Isopentenyl-diphosphate Delta-isomerase I4.6e-4486.73Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE
        L F D+CILVDEND VVGH++KYNCHLME IES+N LHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI+E+ALGARNAAQ++
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE

O48965 Isopentenyl-diphosphate Delta-isomerase II1.9e-4283.67Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE
        L F D CILVDEND VVGH++KYNCHLME IES N LHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHP YRESEL++E+ALG RNAAQ++
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE

Q38929 Isopentenyl-diphosphate Delta-isomerase I, chloroplastic3.9e-4383Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKEAF
        L F D CILVDEND VVGH++KYNCHLME IE++N LHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEE+ LG RNAAQ++ F
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKEAF

Q39472 Isopentenyl-diphosphate Delta-isomerase I1.0e-4386.73Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE
        L F D CILVDEND VVGHESKYNCHLME IES+N LHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI+E+ LG RNAAQ++
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE

Q42553 Isopentenyl-diphosphate Delta-isomerase II, chloroplastic6.6e-4384.69Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE
        L F D CILVDE D VVGH+SKYNCHLMENIE+KN LHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+++ALG RNAAQ++
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE

Arabidopsis top hitse value%identityAlignment
AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 24.7e-4484.69Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE
        L F D CILVDE D VVGH+SKYNCHLMENIE+KN LHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+++ALG RNAAQ++
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKE

AT5G16440.1 isopentenyl diphosphate isomerase 12.8e-4483Show/hide
Query:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKEAF
        L F D CILVDEND VVGH++KYNCHLME IE++N LHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEE+ LG RNAAQ++ F
Subjt:  LEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQKEAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAGTTTTCTGTTCATGCCTTCTTTTTGTATAAAAAAAACCTTTAAAATTTATCATGTGTGCTCAATCATTTGTAACTCACATTTGCCTTGCATCGATCTCGA
ATTCCTGGACAGGTGCATTTTAGTGGATGAGAATGACTGTGTCGTTGGTCATGAATCCAAGTATAACTGTCACTTGATGGAAAATATAGAATCTAAGAACTGGCTGCATC
GTGCTTTCAGCGTCTTTTTATTCAATTCCAAATATGAATTGCTTCTTCAGCAACGATCTGCAACAAAAGTGACATTTCCGCTTGTCTGGACGAACACTTGCTGCAGTCAT
CCGTTGTATAGAGAATCTGAACTAATTGAGGAGGATGCTCTTGGTGCAAGAAATGCTGCACAAAAGGAAGCTTTTAGACGAACTCGGTATTCCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAAGTTTTCTGTTCATGCCTTCTTTTTGTATAAAAAAAACCTTTAAAATTTATCATGTGTGCTCAATCATTTGTAACTCACATTTGCCTTGCATCGATCTCGA
ATTCCTGGACAGGTGCATTTTAGTGGATGAGAATGACTGTGTCGTTGGTCATGAATCCAAGTATAACTGTCACTTGATGGAAAATATAGAATCTAAGAACTGGCTGCATC
GTGCTTTCAGCGTCTTTTTATTCAATTCCAAATATGAATTGCTTCTTCAGCAACGATCTGCAACAAAAGTGACATTTCCGCTTGTCTGGACGAACACTTGCTGCAGTCAT
CCGTTGTATAGAGAATCTGAACTAATTGAGGAGGATGCTCTTGGTGCAAGAAATGCTGCACAAAAGGAAGCTTTTAGACGAACTCGGTATTCCAGCTGA
Protein sequenceShow/hide protein sequence
MAKSFLFMPSFCIKKTFKIYHVCSIICNSHLPCIDLEFLDRCILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSH
PLYRESELIEEDALGARNAAQKEAFRRTRYSS