; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7105 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7105
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionPectin lyase-like superfamily protein
Genome locationctg1528:1205775..1206623
RNA-Seq ExpressionCucsat.G7105
SyntenyCucsat.G7105
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056020.1 polygalacturonase-like [Cucumis melo var. makuwa]1.14e-7198.28Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCP GATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

TYK27707.1 polygalacturonase-like [Cucumis melo var. makuwa]1.14e-7198.28Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCP GATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

XP_004139060.1 polygalacturonase [Cucumis sativus]5.03e-73100Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

XP_008450474.1 PREDICTED: polygalacturonase-like [Cucumis melo]2.17e-6796.4Show/hide
Query:  PPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG
        PP   SLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG
Subjt:  PPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG

Query:  ISIGSLGREVQ
        ISIGSLGREVQ
Subjt:  ISIGSLGREVQ

XP_038888709.1 polygalacturonase-like [Benincasa hispida]1.69e-6691.38Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SK+SCP GATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVK QGLK+SAA +SPNTDGIHVALSS VTILNSIIGTGDDCIS+GP TSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGRE+Q
Subjt:  GPGHGISIGSLGREVQ

TrEMBL top hitse value%identityAlignment
A0A0A0M095 Uncharacterized protein2.43e-73100Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

A0A1S3BPA1 polygalacturonase-like1.05e-6796.4Show/hide
Query:  PPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG
        PP   SLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG
Subjt:  PPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHG

Query:  ISIGSLGREVQ
        ISIGSLGREVQ
Subjt:  ISIGSLGREVQ

A0A5A7ULI9 Polygalacturonase-like5.54e-7298.28Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCP GATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

A0A5D3DV94 Polygalacturonase-like5.54e-7298.28Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        SKSSCP GATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLK+SAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLGREVQ
Subjt:  GPGHGISIGSLGREVQ

A0A6J1EYE0 polygalacturonase-like1.74e-6285.34Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        S  SCP GATSLEFSNSKNI+VSGLTSLNSQMFHIV NGCQNVK QG+K+SAAGNSPNTDGIHVALSS VTI++S I TGDDCIS+GPGTSNLWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHGISIGSLG++V+
Subjt:  GPGHGISIGSLGREVQ

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.1e-3568.18Show/hide
Query:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG
        +CP GA SL FS S NI +SGLTS+NSQ FHIVI+   NV   G+KVSA  NSPNTDGIHV  S +V I NS IGTGDDCISIGPG++N++I+ + CGPG
Subjt:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG

Query:  HGISIGSLGR
        HGISIGSLGR
Subjt:  HGISIGSLGR

P35338 Exopolygalacturonase2.7e-2653.72Show/hide
Query:  SKSSCP--------PGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSN
        SK+SC         P +  ++F N  N  VSG+T LNS+ FH+ +  C+N+  + + V+A G+SPNTDGIH+  SS +TI N++IG GDDCISIGPGTS 
Subjt:  SKSSCP--------PGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSN

Query:  LWIENVACGPGHGISIGSLGR
        + I  V CGPGHGISIGSLGR
Subjt:  LWIENVACGPGHGISIGSLGR

P48979 Polygalacturonase3.8e-4479.28Show/hide
Query:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG
        SCP GAT+L FS+S NI+VSGL SLNSQMFHIVIN  QNV+ QG++VS +GNSPNTDGIHV +SS VTILNS I TGDDC+SIGPGTSNLWIE VACGPG
Subjt:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG

Query:  HGISIGSLGRE
        HGISIGSLG+E
Subjt:  HGISIGSLGRE

P49062 Exopolygalacturonase clone GBGE1841.2e-2648.21Show/hide
Query:  KSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACG
        K  C    TSL+F N KN+ ++G++S+N++ FH+ +   +NV  Q +K++A   SPNTDGIH++ +  V+IL+S I TGDDC+S+G G++N+ +E V CG
Subjt:  KSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACG

Query:  PGHGISIGSLGR
        PGHG+S+GSLG+
Subjt:  PGHGISIGSLGR

Q6H9K0 Exopolygalacturonase (Fragment)2.4e-2757.27Show/hide
Query:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG
        +C   A +L F   K+ MV  +TSLNS+MFHI +  C+++  Q + V+A G S NTDGIHV +S  VTI N+ I TGDDCISIGPG+ N+ I  V CGPG
Subjt:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG

Query:  HGISIGSLGR
        HGISIGSLGR
Subjt:  HGISIGSLGR

Arabidopsis top hitse value%identityAlignment
AT1G05660.1 Pectin lyase-like superfamily protein2.3e-3353.45Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        S  +CPPG  S+ F+++K++++SG+ S+NSQ+ H+ +NGC NV  + +K+ A GNSPNTDG HV  S+ VT   S + TGDDC++IGPGT NL I  +AC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGREVQ
        GPGHG+SIGSL +E++
Subjt:  GPGHGISIGSLGREVQ

AT1G65570.1 Pectin lyase-like superfamily protein1.2e-3454.87Show/hide
Query:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG
        +CP GAT+L F +S N+ + G+ SLNSQ+FHI IN C+N+K + +++ A   SPNTDGIH+ LS+ + + N+ I TGDDCISIGPGT NL ++ + CGPG
Subjt:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG

Query:  HGISIGSLGREVQ
        HGISIGSL + ++
Subjt:  HGISIGSLGREVQ

AT2G43860.1 Pectin lyase-like superfamily protein7.8e-3768.18Show/hide
Query:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG
        +CP GA SL FS S NI +SGLTS+NSQ FHIVI+   NV   G+KVSA  NSPNTDGIHV  S +V I NS IGTGDDCISIGPG++N++I+ + CGPG
Subjt:  SCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPG

Query:  HGISIGSLGR
        HGISIGSLGR
Subjt:  HGISIGSLGR

AT2G43870.1 Pectin lyase-like superfamily protein4.5e-4573.68Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        S  +CP GAT++ F +S N++VSGLTSLNSQMFH+VINGC NVK QG+KV AAGNSPNTDGIHV  SS+V+I N+ I TGDDC+SIGPGT+ LWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGRE
        GPGHGISIGSLG++
Subjt:  GPGHGISIGSLGRE

AT3G59850.1 Pectin lyase-like superfamily protein4.1e-4675.44Show/hide
Query:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC
        S  +CP GATS+ F +S+N+++SGLTSLNSQMFH+ INGC NVK  G+KVSA GNSPNTDGIHV  SSTV+ILNS I TGDDC+SIGPGT+ LWIENVAC
Subjt:  SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVAC

Query:  GPGHGISIGSLGRE
        GPGHGISIGSLG+E
Subjt:  GPGHGISIGSLGRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCAAAAGCTCTTGCCCCCCCGGAGCCACGTCGTTGGAATTTTCCAATTCAAAGAACATAATGGTTAGCGGCTTAACGTCACTGAATAGTCAAATGTTCCACATAGTAAT
TAATGGTTGTCAAAATGTGAAAGCACAAGGACTGAAGGTATCAGCTGCTGGTAATAGCCCGAACACCGATGGTATTCACGTAGCATTATCCTCAACGGTTACTATCCTCA
ACTCCATAATTGGCACGGGCGACGATTGCATTTCAATAGGTCCTGGCACGTCGAACTTGTGGATTGAAAATGTTGCTTGTGGACCTGGACATGGAATCAGCATTGGGAGT
CTAGGAAGAGAAGTGCAA
mRNA sequenceShow/hide mRNA sequence
TCCAAAAGCTCTTGCCCCCCCGGAGCCACGTCGTTGGAATTTTCCAATTCAAAGAACATAATGGTTAGCGGCTTAACGTCACTGAATAGTCAAATGTTCCACATAGTAAT
TAATGGTTGTCAAAATGTGAAAGCACAAGGACTGAAGGTATCAGCTGCTGGTAATAGCCCGAACACCGATGGTATTCACGTAGCATTATCCTCAACGGTTACTATCCTCA
ACTCCATAATTGGCACGGGCGACGATTGCATTTCAATAGGTCCTGGCACGTCGAACTTGTGGATTGAAAATGTTGCTTGTGGACCTGGACATGGAATCAGCATTGGGAGT
CTAGGAAGAGAAGTGCAA
Protein sequenceShow/hide protein sequence
SKSSCPPGATSLEFSNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHGISIGS
LGREVQ