CuGenDBv2

Gene ID	Cucsat.G7153
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	60S ribosomal protein L30
Genome location	ctg1528:2557435..2559259
RNA-Seq Expression	Cucsat.G7153
Synteny	Cucsat.G7153
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000231 - Ribosomal protein L30e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]

7.83e-72

98.17

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]

1.12e-73

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_011660089.1 60S ribosomal protein L30 [Cucumis sativus]

3.90e-74

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_022925483.1 60S ribosomal protein L30 [Cucurbita moschata]

3.88e-72

99.08

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

2.73e-72

99.08

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXA9 Ribosomal_L7Ae domain-containing protein

1.89e-74

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A1S3BQS6 60S ribosomal protein L30

5.42e-74

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A5D3CI16 60S ribosomal protein L30

5.42e-74

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A6J1EFB5 60S ribosomal protein L30

1.88e-72

99.08

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

A0A6J1HXQ4 60S ribosomal protein L30

1.88e-72

99.08

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

SwissProt top hits

e value

%identity

Alignment

O49884 60S ribosomal protein L30

9.1e-56

95.41

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q8VZ19 60S ribosomal protein L30-2

2.8e-49

84.4

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9C8F7 Putative 60S ribosomal protein L30-1

4.4e-50

86.24

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9LSA3 60S ribosomal protein L30-3

1.4e-48

83.49

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q9M5M6 60S ribosomal protein L30

7.2e-53

91.74

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LRS+KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

3.1e-51

86.24

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.0e-50

84.4

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.0e-49

83.49

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Sequences

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CDS sequence

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ATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGAC
CTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAGTACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATT
ACAACGGAAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAA
AGTTAG

mRNA sequence

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Protein sequence

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MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPE
S

Cucsat.G7153 (gene) of Cucumber (B10) v3 genome