; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7284 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7284
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionSOSS complex subunit B-like protein
Genome locationctg1528:5027352..5031811
RNA-Seq ExpressionCucsat.G7284
SyntenyCucsat.G7284
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0002181 - cytoplasmic translation (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]8.32e-96100Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]8.61e-96100Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]4.28e-8993.53Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]1.23e-8892.09Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]1.55e-9196.4Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMT MEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein4.03e-96100Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A1S3BPN4 SOSS complex subunit B homolog4.17e-96100Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A5D3CIR3 SOSS complex subunit B-like protein4.17e-96100Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A6J1HAL0 SOSS complex subunit B homolog2.07e-8993.53Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
A0A6J1HZ66 SOSS complex subunit B homolog3.44e-8892.09Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTM+GQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESV+SPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B14.1e-1340.57Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE
Q3SWT1 SOSS complex subunit B11.1e-1337.96Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP
         PN SE +   +T   SNK V+   S  +P +   PP
Subjt:  TPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP
Q54X41 SOSS complex subunit B homolog2.8e-1439.64Show/hide
Query:  MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVF
        +I + ++ P ++N +N  FIVL+KG  T + +  + Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVF

Query:  VETPNMSEIHW
        VE PN+S   W
Subjt:  VETPNMSEIHW
Q8R2Y9 SOSS complex subunit B11.8e-1338.28Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSEIHWVPDTINS-NKYVKESVLSP
         PN SE +   +T  + NK V+ +  SP
Subjt:  TPNMSEIHWVPDTINS-NKYVKESVLSP
Q9BQ15 SOSS complex subunit B14.1e-1340.57Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G +T  +  ++V    VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKG-MTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE
Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein3.4e-4760.14Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        M + LKD+VPAAQN ++T+FI+L+K  ++       C +L ADETAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + 
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI
        FVETPN+SEI W+PD  N  +Y++  V+S YSRIFPP+
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACCCAATTCATAGTTTTGGAGAAAGGCATGACAACGATGGAAGGACAAAACAAGGTATG
CCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAATGTGATGTTGTTGAGCCGAGCGACATTATACGGTTAACGAATGGGATATTTT
CGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTCGTAGAGACACCAAATATGAGTGAGATC
CACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACCCAATTCATAGTTTTGGAGAAAGGCATGACAACGATGGAAGGACAAAACAAGGTATG
CCAATCACTGGTGGCCGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAATGTGATGTTGTTGAGCCGAGCGACATTATACGGTTAACGAATGGGATATTTT
CGTACAGTCGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTCGTAGAGACACCAAATATGAGTGAGATC
CACTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTATTCTCGCATCTTTCCTCCCATTCGTTGA
Protein sequenceShow/hide protein sequence
MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEI
HWVPDTINSNKYVKESVLSPYSRIFPPIR