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Cucsat.G7301 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7301
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description60S ribosomal protein L39
Genome locationctg1528:5280597..5282275
RNA-Seq ExpressionCucsat.G7301
SyntenyCucsat.G7301
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2113890.1 unnamed protein product [Brassica napus]7.98e-1858.33Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFK
        MPSHK+F IKKKLAKKMRQNRPIPHWIRLRTDNTIR F   C V++ ++ F  ++      F +  SG   S GTGA  +LD K
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFK

KAB5513865.1 hypothetical protein DKX38_027771 [Salix brachista]2.86e-1756.82Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFKAFMV
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRSF  S S+F                          S GTG  LSLD + F V
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFKAFMV

KAB5553387.1 hypothetical protein DKX38_010698 [Salix brachista]7.23e-1690.48Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI SF  SC
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC

KAG6532786.1 hypothetical protein ZIOFF_006639 [Zingiber officinale]5.33e-1666.67Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC--SVFNHINSFVLLVLNLASY
        MPSHKTF+IK+KLAKKMRQNRPIPHWIRLRTDNTIR F H+   S  +  ++F  L+LN  S+
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC--SVFNHINSFVLLVLNLASY

XP_004135586.1 60S ribosomal protein L39 [Cucumis sativus]9.96e-16100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein4.82e-16100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

A0A1S3BCZ7 60S ribosomal protein L394.82e-16100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

A0A5N5J8N4 Uncharacterized protein1.38e-1756.82Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFKAFMV
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRSF  S S+F                          S GTG  LSLD + F V
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFKAFMV

A0A5N5ME93 Uncharacterized protein3.50e-1690.48Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC
        MPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI SF  SC
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSC

A0A6J1HZ80 60S ribosomal protein L394.82e-16100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-14.8e-1291.67Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51425 60S ribosomal protein L399.7e-1394.44Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51426 60S ribosomal protein L39-29.7e-1394.44Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q5SMI4 60S ribosomal protein L39-32.8e-1291.67Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q6KAJ8 60S ribosomal protein L39-19.7e-1394.44Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein3.0e-0996.43Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIR
        IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT3G02190.1 Ribosomal protein L39 family protein1.1e-1186.11Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT4G31985.1 Ribosomal protein L39 family protein3.4e-1391.67Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTC
TTTTCAACACTCCTGTTCTGTCTTTAATCATATTAACTCTTTTGTTCTTCTCGTTTTAAATTTAGCGTCATATTTTGGGATGTATTCTTCAGGTATAATGCTAAGCGAAG
GCACTGGCGCCGCACTAAGCTTGGATTTTAAGGCGTTTATGGTGTGGTTCGGTCTTCATCCTGTTATGAACCTATTTATGTTATATGTTGATTGTGGAGAAGACAAAAGG
ATAACGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTC
TTTTCAACACTCCTGTTCTGTCTTTAATCATATTAACTCTTTTGTTCTTCTCGTTTTAAATTTAGCGTCATATTTTGGGATGTATTCTTCAGGTATAATGCTAAGCGAAG
GCACTGGCGCCGCACTAAGCTTGGATTTTAAGGCGTTTATGGTGTGGTTCGGTCTTCATCCTGTTATGAACCTATTTATGTTATATGTTGATTGTGGAGAAGACAAAAGG
ATAACGAGCTAG
Protein sequenceShow/hide protein sequence
MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSFQHSCSVFNHINSFVLLVLNLASYFGMYSSGIMLSEGTGAALSLDFKAFMVWFGLHPVMNLFMLYVDCGEDKR
ITS