; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7398 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7398
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationctg1528:1106192..1108727
RNA-Seq ExpressionCucsat.G7398
SyntenyCucsat.G7398
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025314 - Domain of unknown function DUF4219
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.90e-18783.87Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK++VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP                  V ET+AE  +YIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQLDQAKI+P+HIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAA+QEILFEE RLGIVSSL SDVALATTH R ANE+IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPG  +KPK S K  S  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
        VAAAT SDIT P + QL DLHDLLKQVISS STALAVTPG+
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.13e-18881.79Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPM-----DTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITW
        MEK+ VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPT PM     + TE+ D + SD+ V E T E  +YIERLEDWDSKNHQIITW
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPM-----DTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAAL
        LGNTSIPAIHTQFD FD+AKELW+FL TRFQSIGLAHYYQLHS LV+LNQE GQSVNEYL T QPIWTQLDQAKI+P+HIRLIKVLMGLR EYESVRAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAAL

Query:  LHRNPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKY
        LHRNPLPSLDAA+QEILFEE RLGIVSSLPSDVALATTH R ANE+ FCKNCKLHGHKFANCPTIECRYC+KRGHILDNCPTRPPRPP   +K K S K 
Subjt:  LHRNPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKY

Query:  SSPPIVAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
         S  +VAAAT SDIT P + QL DLHDLLKQV+SS STALAVTPG+
Subjt:  SSPPIVAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]3.46e-18779.47Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK ++ARPIST LDG+NYITWAHQMRSFLIGRKLW IVTGDITKPVKP PP+ +T     + +D+   +TTAE  KYIERLEDWD KNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IP IHTQFDAFDTAKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQL+QAKI+ +HI LIKVLMGLRPEYESV AALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLD AIQ+ILFEE RL I SSLPSDVAL T+  +  +E  FCKNCKLHGH FANCPTIECRYCHKRGHILD+CPTRPPRPPG  +KPK S K  +  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
        VAAATPSDIT P  FQL DLHDLLKQVISSNSTALAVT G+
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]1.28e-21383.57Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK++VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP                  V ET+AE  +YIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQL+QAKI+P+HIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAA+QEILFEE RLGIVSSL SDVALATTH R ANE+IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPG  +KPK S K  S  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII
        VAAAT SDIT P + QL DLHDLLKQVISS STALAVTPGSGFS+G SDW+GTEGG+II
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]6.14e-26499.72Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTP MDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII
        VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882006.20e-21483.57Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK++VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP                  V ET+AE  +YIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQL+QAKI+P+HIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAA+QEILFEE RLGIVSSL SDVALATTH R ANE+IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPG  +KPK S K  S  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII
        VAAAT SDIT P + QL DLHDLLKQVISS STALAVTPGSGFS+G SDW+GTEGG+II
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGSGFSNGASDWYGTEGGTII

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.38e-18683.58Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK++VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP                  V ET+AE  +YIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQLDQAKI+P+HIRLIKVLMGLRPEYE VRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAA+QEILFEE RLGIVSSL SDVALATTH R ANE+IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPG  +KPK S K  S  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
        VAAAT SDIT P + QL DLHDLLKQVISS STALAVTPG+
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

A0A5A7TXR0 Putative mitochondrial protein5.45e-18981.79Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPM-----DTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITW
        MEK+ VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPT PM     + TE+ D + SD+ V E T E  +YIERLEDWDSKNHQIITW
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPM-----DTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAAL
        LGNTSIPAIHTQFD FD+AKELW+FL TRFQSIGLAHYYQLHS LV+LNQE GQSVNEYL T QPIWTQLDQAKI+P+HIRLIKVLMGLR EYESVRAAL
Subjt:  LGNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAAL

Query:  LHRNPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKY
        LHRNPLPSLDAA+QEILFEE RLGIVSSLPSDVALATTH R ANE+ FCKNCKLHGHKFANCPTIECRYC+KRGHILDNCPTRPPRPP   +K K S K 
Subjt:  LHRNPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKY

Query:  SSPPIVAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
         S  +VAAAT SDIT P + QL DLHDLLKQV+SS STALAVTPG+
Subjt:  SSPPIVAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

A0A5A7UKE6 Integrase, catalytic core1.68e-18779.47Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK ++ARPIST LDG+NYITWAHQMRSFLIGRKLW IVTGDITKPVKP PP+ +T     + +D+   +TTAE  KYIERLEDWD KNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IP IHTQFDAFDTAKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQL+QAKI+ +HI LIKVLMGLRPEYESV AALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLD AIQ+ILFEE RL I SSLPSDVAL T+  +  +E  FCKNCKLHGH FANCPTIECRYCHKRGHILD+CPTRPPRPPG  +KPK S K  +  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
        VAAATPSDIT P  FQL DLHDLLKQVISSNSTALAVT G+
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-944.31e-18783.87Show/hide
Query:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS
        MEK++VARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKP                  V ET+AE  +YIERLEDWDSKNHQIITWLGNTS
Subjt:  MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTS

Query:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP
        IPAIHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLHS LVSLNQE GQSVNEYLATLQPIWTQLDQAKI+P+HIRLIKVLMGLRPEYESVRAALLHRNP
Subjt:  IPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNP

Query:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI
        LPSLDAA+QEILFEE RLGIVSSL SDVALATTH R ANE+IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPG  +KPK S K  S  +
Subjt:  LPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPI

Query:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS
        VAAAT SDIT P + QL DLHDLLKQVISS STALAVTPG+
Subjt:  VAAATPSDITTPQNFQLNDLHDLLKQVISSNSTALAVTPGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).6.6e-1023.56Show/hide
Query:  DGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTA
        D  NY+ W  + RSFL   K +  + G + KP                             D +    + W+  N  ++ WL N+    +       +TA
Subjt:  DGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTA

Query:  KELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQ-------------------AKINPEHIRLIKVLMGLR--PEYESVRA
         ++W+ L   F        YQL  RL +L Q GG SV EY   L  +W +L +                   A+   E  +  + LMGL+    +E+V  
Subjt:  KELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQ-------------------AKINPEHIRLIKVLMGLR--PEYESVRA

Query:  ALLHRNPLPSLDAAIQEILFEENRL
         ++ + P PSL  A   +   E+ +
Subjt:  ALLHRNPLPSLDAAIQEILFEENRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAACATGAAGTTGCTCGTCCCATTAGCACCATTCTCGATGGAACTAATTATATCACTTGGGCCCACCAAATGAGGAGTTTTTTGATAGGTCGAAAACTGTGGCG
CATCGTTACTGGAGATATCACTAAACCAGTCAAACCTACTCCTCCGATGGACACCACTGAAAATATTGATACAGACCCATCTGATGTCACTGTTCAAGAGACGACTGCAG
AAACCGACAAATACATTGAACGTCTTGAGGATTGGGATAGCAAAAACCATCAGATCATTACTTGGTTAGGTAACACCTCTATTCCAGCCATTCACACACAATTTGATGCA
TTTGATACGGCAAAAGAACTCTGGGATTTTCTGTCCACACGTTTTCAGTCTATTGGACTTGCTCACTATTACCAATTGCACTCTCGACTTGTTAGTCTAAATCAGGAGGG
AGGACAATCTGTGAACGAGTATCTTGCAACTCTTCAACCAATATGGACTCAGTTAGATCAAGCAAAAATCAATCCGGAGCATATTCGCCTCATCAAAGTTCTTATGGGTC
TTCGCCCAGAGTATGAATCAGTCCGTGCCGCATTGTTACATCGTAACCCTCTGCCGAGTCTTGATGCTGCCATACAAGAAATCTTATTTGAGGAAAACCGCCTTGGCATT
GTTTCCTCTCTGCCATCTGATGTCGCTCTTGCAACCACCCATTCACGATCGGCTAATGAGTCTATTTTCTGCAAAAATTGCAAACTTCATGGTCATAAGTTTGCTAATTG
TCCTACTATTGAGTGCAGGTATTGCCACAAACGAGGTCATATCTTGGACAACTGTCCCACCCGTCCACCCCGTCCTCCTGGTGCTCCATATAAACCCAAGTCCTCCACTA
AATACAGTTCTCCACCTATTGTTGCTGCTGCTACCCCATCTGATATCACCACACCTCAGAATTTTCAGTTAAATGATCTTCATGACTTACTGAAACAGGTGATCTCTTCC
AACTCTACTGCTCTTGCCGTCACTCCAGGTTCAGGATTCTCAAACGGGGCAAGTGATTGGTACGGGACGGAAGGTGGGACGATTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAACATGAAGTTGCTCGTCCCATTAGCACCATTCTCGATGGAACTAATTATATCACTTGGGCCCACCAAATGAGGAGTTTTTTGATAGGTCGAAAACTGTGGCG
CATCGTTACTGGAGATATCACTAAACCAGTCAAACCTACTCCTCCGATGGACACCACTGAAAATATTGATACAGACCCATCTGATGTCACTGTTCAAGAGACGACTGCAG
AAACCGACAAATACATTGAACGTCTTGAGGATTGGGATAGCAAAAACCATCAGATCATTACTTGGTTAGGTAACACCTCTATTCCAGCCATTCACACACAATTTGATGCA
TTTGATACGGCAAAAGAACTCTGGGATTTTCTGTCCACACGTTTTCAGTCTATTGGACTTGCTCACTATTACCAATTGCACTCTCGACTTGTTAGTCTAAATCAGGAGGG
AGGACAATCTGTGAACGAGTATCTTGCAACTCTTCAACCAATATGGACTCAGTTAGATCAAGCAAAAATCAATCCGGAGCATATTCGCCTCATCAAAGTTCTTATGGGTC
TTCGCCCAGAGTATGAATCAGTCCGTGCCGCATTGTTACATCGTAACCCTCTGCCGAGTCTTGATGCTGCCATACAAGAAATCTTATTTGAGGAAAACCGCCTTGGCATT
GTTTCCTCTCTGCCATCTGATGTCGCTCTTGCAACCACCCATTCACGATCGGCTAATGAGTCTATTTTCTGCAAAAATTGCAAACTTCATGGTCATAAGTTTGCTAATTG
TCCTACTATTGAGTGCAGGTATTGCCACAAACGAGGTCATATCTTGGACAACTGTCCCACCCGTCCACCCCGTCCTCCTGGTGCTCCATATAAACCCAAGTCCTCCACTA
AATACAGTTCTCCACCTATTGTTGCTGCTGCTACCCCATCTGATATCACCACACCTCAGAATTTTCAGTTAAATGATCTTCATGACTTACTGAAACAGGTGATCTCTTCC
AACTCTACTGCTCTTGCCGTCACTCCAGGTTCAGGATTCTCAAACGGGGCAAGTGATTGGTACGGGACGGAAGGTGGGACGATTATTTGA
Protein sequenceShow/hide protein sequence
MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPPMDTTENIDTDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDA
FDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAIQEILFEENRLGI
VSSLPSDVALATTHSRSANESIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGAPYKPKSSTKYSSPPIVAAATPSDITTPQNFQLNDLHDLLKQVISS
NSTALAVTPGSGFSNGASDWYGTEGGTII