; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7724 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7724
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description30S ribosomal protein S13, chloroplastic-like
Genome locationctg1546:44153..45275
RNA-Seq ExpressionCucsat.G7724
SyntenyCucsat.G7724
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578996.1 Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.85e-7578.77Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLG+VSN LL RF SLSI+SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA
        DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA

XP_004140326.1 small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus]4.35e-100100Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
        DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH

XP_011655183.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus]6.45e-77100Show/hide
Query:  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNAR
        MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNAR
Subjt:  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNAR

Query:  TVKSKQTRVGKRKAFH
        TVKSKQTRVGKRKAFH
Subjt:  TVKSKQTRVGKRKAFH

XP_022993181.1 small ribosomal subunit protein S13, mitochondrial-like [Cucurbita maxima]3.08e-7578.77Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLG+VSN LL RF SLSI+SIH+ AGMEIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGHEL KCV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA
        DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ    K+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA

XP_023550656.1 30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]1.62e-7480.14Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLGIVSN LL RF SLSI+SIH+ AGMEIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA
        DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA

TrEMBL top hitse value%identityAlignment
A0A0A0KMX9 Uncharacterized protein2.10e-100100Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
        DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH

A0A2P5D3D1 Ribosomal protein1.76e-4956.67Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQS-----IHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD
        MFG+R S  +VSN  L   +S  I       I++ AGMEIPD K L+FAL YI+GIGRARA Q+L++L++ENKL+K+LTK+E+  L +E+SKY++G EL 
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQS-----IHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD

Query:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK
         CV+RD+ RL DI+C+RG RH  GLP RGQRTKTNART KS++  V  RK
Subjt:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK

A0A6J1CKC9 30S ribosomal protein S13, chloroplastic-like6.55e-7278.23Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLGIVSNA L R  S SI+SIH+ AGMEIPD KPL+FALQYI+GIGR+RANQVLA+LHL NKL+KDLTK+EL+ L DEISKY VGHEL+ CV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA
        DI RLQ+IQCHRGIRH QGLPCRGQRTKTNART+KSKQ  V GK+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like9.02e-7478.77Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLG+VSN LL RF SLSI SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA
        DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA

A0A6J1JVL8 small ribosomal subunit protein S13, mitochondrial-like1.49e-7578.77Show/hide
Query:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR
        MFGVRRSLG+VSN LL RF SLSI+SIH+ AGMEIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGHEL KCV++
Subjt:  MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQR

Query:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA
        DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ    K+KA
Subjt:  DIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA

SwissProt top hitse value%identityAlignment
A9B434 30S ribosomal protein S134.8e-2048.33Show/hide
Query:  AGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEISK-YTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTK
        +G++IP +K ++ +L YI GIGR  + ++LA+ ++  N   KDLT+ E+I L + I + YTV  +L + VQ +I RL DI C+RGIRH +GLP RGQRTK
Subjt:  AGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEISK-YTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTK

Query:  TNARTVKSKQTRV--GKRKA
        TNART + K+     GK+KA
Subjt:  TNARTVKSKQTRV--GKRKA

P42732 30S ribosomal protein S13, chloroplastic6.1e-3152.31Show/hide
Query:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRH
        P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++ELI L DE+SKY +  +L +     I RL++IQC+RG+RH
Subjt:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRH

Query:  EQGLPCRGQRTKTNARTVKSKQTRV-GKRK
         QGLPCRGQRTK N RT+K K+  + GK+K
Subjt:  EQGLPCRGQRTKTNARTVKSKQTRV-GKRK

P82163 30S ribosomal protein S13, chloroplastic3.1e-2750.79Show/hide
Query:  LSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLP
        LSI+ + +G  +EIP++K ++++LQYI+GIGR+RA Q+L  L LENKL+K+L++ EL+ + DE++KY +  +L +     I RL++IQC+RG+RH QGLP
Subjt:  LSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLP

Query:  CRGQRTKTNARTVK-SKQTRV-GKRK
        CRGQRTK N RT+K  K+ ++ GK+K
Subjt:  CRGQRTKTNARTVK-SKQTRV-GKRK

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial5.0e-3350Show/hide
Query:  MFGVRRSLGIVSNALLPRF--ESLSIQSIHLGAGM--EIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDK
        MFG  R L  V+  L        + +Q+I++G G+  EIPD+K L +ALQ ++GIGR++A  ++A+L +ENK  KDL+K+EL  + + +SKY +G++L K
Subjt:  MFGVRRSLGIVSNALLPRF--ESLSIQSIHLGAGM--EIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDK

Query:  CVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKR
        CV+RD+GRL  IQC+RGIRH   LPCRGQRT TNART +S++T  G R
Subjt:  CVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKR

Q9CA19 Small ribosomal subunit protein S13, mitochondrial2.2e-2848.68Show/hide
Query:  MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD
        M G+RRS   L  +S +LL    F  L +Q I +G   E+P++KPLK  LQ + GIGR +++QVL  L + NKL++DLT KELI L +E+ ++  G EL 
Subjt:  MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD

Query:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA
        + V  +I RL ++ C+RG RH  GLPCRGQRT TNART K K   + GK+KA
Subjt:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA

Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family6.9e-0631.11Show/hide
Query:  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS---------------------KYT--VGHELDKCVQRDIGRLQDIQC
        +   + + FAL  I GIGR  AN V  +  ++ NK + +L+  E+  L   ++                     KY+  V + LD  ++ D+ RL+ I+ 
Subjt:  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS---------------------KYT--VGHELDKCVQRDIGRLQDIQC

Query:  HRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK
        HRG+RH  GL  RGQ TKT  R  + K   V K++
Subjt:  HRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK

AT1G34030.1 Ribosomal protein S13/S18 family6.9e-0631.11Show/hide
Query:  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS---------------------KYT--VGHELDKCVQRDIGRLQDIQC
        +   + + FAL  I GIGR  AN V  +  ++ NK + +L+  E+  L   ++                     KY+  V + LD  ++ D+ RL+ I+ 
Subjt:  IPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEIS---------------------KYT--VGHELDKCVQRDIGRLQDIQC

Query:  HRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK
        HRG+RH  GL  RGQ TKT  R  + K   V K++
Subjt:  HRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK

AT1G77750.1 Ribosomal protein S13/S18 family1.5e-2948.68Show/hide
Query:  MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD
        M G+RRS   L  +S +LL    F  L +Q I +G   E+P++KPLK  LQ + GIGR +++QVL  L + NKL++DLT KELI L +E+ ++  G EL 
Subjt:  MFGVRRS---LGIVSNALLPR--FESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELD

Query:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA
        + V  +I RL ++ C+RG RH  GLPCRGQRT TNART K K   + GK+KA
Subjt:  KCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA

AT5G14320.1 Ribosomal protein S13/S18 family4.3e-3252.31Show/hide
Query:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRH
        P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++ELI L DE+SKY +  +L +     I RL++IQC+RG+RH
Subjt:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRH

Query:  EQGLPCRGQRTKTNARTVKSKQTRV-GKRK
         QGLPCRGQRTK N RT+K K+  + GK+K
Subjt:  EQGLPCRGQRTKTNARTVKSKQTRV-GKRK

AT5G14320.2 Ribosomal protein S13/S18 family2.5e-1650Show/hide
Query:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHEL
        P  +SLSI+   +G G+EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++ELI L DE+SKY +  +L
Subjt:  PRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGAGTTCGTCGTTCCTTGGGGATCGTCTCTAATGCTCTCCTTCCTCGCTTTGAATCATTATCAATCCAGTCGATTCATTTAGGAGCAGGTATGGAGATCCCCGA
TAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGA
CTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGC
CATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTT
TCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGAGTTCGTCGTTCCTTGGGGATCGTCTCTAATGCTCTCCTTCCTCGCTTTGAATCATTATCAATCCAGTCGATTCATTTAGGAGCAGGTATGGAGATCCCCGA
TAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGA
CTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGC
CATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTT
TCATTGA
Protein sequenceShow/hide protein sequence
MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQC
HRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH