CuGenDBv2

Gene ID	Cucsat.G7734
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	THO complex subunit 1
Genome location	ctg1546:508412..510088
RNA-Seq Expression	Cucsat.G7734
Synteny	Cucsat.G7734
Gene Ontology terms	GO:0006406 - mRNA export from nucleus (biological process) GO:0032784 - regulation of DNA-templated transcription, elongation (biological process) GO:0000445 - THO complex part of transcription export complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0062399.1 THO complex subunit 1 [Cucumis melo var. makuwa]

4.68e-94

99.35

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAK+EEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

KGN51016.1 hypothetical protein Csa_007827 [Cucumis sativus]

2.89e-95

100

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

XP_008460496.1 PREDICTED: THO complex subunit 1 [Cucumis melo]

8.12e-95

99.35

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAK+EEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

XP_011655214.1 THO complex subunit 1 [Cucumis sativus]

8.47e-95

100

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

XP_038892206.1 THO complex subunit 1 isoform X3 [Benincasa hispida]

1.06e-91

96.1

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAK AVQQV+ENQMATPASENDGEGTRSDPDGPSAGMDVDTA+AT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GN+SQGG STPEENKLSSDTDIGQEAGQLEADAEVE GMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTL0 Uncharacterized protein

1.40e-95

100

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

A0A1S3CC63 THO complex subunit 1

3.93e-95

99.35

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAK+EEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

A0A5A7V9M3 THO complex subunit 1

2.27e-94

99.35

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAK+EEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

A0A6J1CC37 THO complex subunit 1

3.13e-86

90.91

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEE KG+V+QV+ENQMATPASENDGEGTRSD DGPSA MDVDT +A 
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        GNVSQGG  TP+ENK SSDTDIGQE+GQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

A0A6J1G1S6 THO complex subunit 1

4.42e-86

90.26

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVR+KYQAKPNERSKRAKKEE KGAV+Q +ENQMATPASENDGEGTRSDPDGPS  MD DT +A 
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
        G+VSQGG  TPEENK SSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG
Subjt:  GNVSQGGISTPEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

SwissProt top hits

e value

%identity

Alignment

Q93VM9 THO complex subunit 1

3.7e-31

53.06

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRF+ARQDLEGFSRFT+ GIEGVVP+ELLPP+VR+KYQAKPNE++KRAKKEE KG   + + NQ+    SE + EG R D +   +    DT    
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD
                 TPEE +    SDT+ GQEAGQ+E     E G++D + D
Subjt:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD

Arabidopsis top hits

e value

%identity

Alignment

AT5G09860.1 nuclear matrix protein-related

2.6e-32

53.06

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRF+ARQDLEGFSRFT+ GIEGVVP+ELLPP+VR+KYQAKPNE++KRAKKEE KG   + + NQ+    SE + EG R D +   +    DT    
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD
                 TPEE +    SDT+ GQEAGQ+E     E G++D + D
Subjt:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD

AT5G09860.2 nuclear matrix protein-related

2.6e-32

53.06

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Query:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT
        CWKGLRF+ARQDLEGFSRFT+ GIEGVVP+ELLPP+VR+KYQAKPNE++KRAKKEE KG   + + NQ+    SE + EG R D +   +    DT    
Subjt:  CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIAT

Query:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD
                 TPEE +    SDT+ GQEAGQ+E     E G++D + D
Subjt:  GNVSQGGISTPEENKL--SSDTDIGQEAGQLEADAEVEPGMIDGETD

Sequences

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CDS sequence

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TGCTGGAAAGGCCTTCGGTTTTCAGCTCGGCAGGATTTAGAAGGATTTTCTCGGTTCACCGACCATGGCATTGAAGGTGTTGTGCCGTTGGAACTCCTGCCACCTGATGT
ACGAGCCAAATACCAAGCCAAACCAAATGAGAGATCTAAACGTGCTAAAAAGGAAGAAGCAAAAGGGGCAGTCCAGCAAGTTGATGAAAATCAGATGGCAACTCCAGCCA
GTGAGAACGATGGCGAAGGAACCAGAAGTGATCCCGATGGGCCATCAGCAGGGATGGATGTCGATACAGCTATTGCCACGGGCAATGTATCTCAAGGTGGTATTTCAACT
CCAGAAGAAAATAAACTAAGCTCTGACACGGATATTGGTCAAGAGGCAGGCCAGTTGGAAGCCGATGCTGAGGTGGAGCCGGGCATGATTGATGGCGAGACAGATGCAGA
GGTTGATTTGGATACTGCAGGTTGA

mRNA sequence

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Protein sequence

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CWKGLRFSARQDLEGFSRFTDHGIEGVVPLELLPPDVRAKYQAKPNERSKRAKKEEAKGAVQQVDENQMATPASENDGEGTRSDPDGPSAGMDVDTAIATGNVSQGGIST
PEENKLSSDTDIGQEAGQLEADAEVEPGMIDGETDAEVDLDTAG

Cucsat.G7734 (gene) of Cucumber (B10) v3 genome