CuGenDBv2

Gene ID	Cucsat.G7810
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	ribosomal RNA-processing protein 17
Genome location	ctg1556:1502841..1505223
RNA-Seq Expression	Cucsat.G7810
Synteny	Cucsat.G7810
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

5.76e-112

93.88

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQ LGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

8.97e-93

80.1

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTAT   Q + KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

6.90e-91

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +T  +Q L KDKKH+LP+TKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_031740787.1 ribosomal RNA-processing protein 17 isoform X1 [Cucumis sativus]

4.63e-123

99.49

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQ LGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

1.05e-96

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MV+NDGEEG ELAQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ+EEA+RR RIEARKKR+LEKDLVL+GGVLPADR VD++ND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D    + +EEE+PLAP SE TTYD+GN+KVTV TSEVSRE+EIDPIDKPQTAT   Q   KDKKHNLP+TKKK FKKVAKQR RPK RSKRDK+KG+KKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

2.24e-123

99.49

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQ LGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

2.79e-112

93.88

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDGEEGGELAQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVL+GGVLPADRAVDDQND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        DQ +EEEEPLAP SEA TYDNGNVKVTVTTSEVSRE EIDPIDKPQTA   AQ LGKDKKHNLPITKKKLFKKVAKQR RPKLRSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

4.34e-93

80.1

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTAT   Q + KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

4.74e-91

77.5

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE T YD+GN+KVTVTTSEV R++EIDPIDKPQ +T  +Q L KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

5.51e-90

76.5

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Query:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND
        MVKN+  EGG L QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQND

Query:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK
        D      +EEE+PLAP+SE TTYD+GN+KVTVTTSEV RE+EIDPIDKPQ +T  +Q L KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  D----QGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

2.7e-34

54.01

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Query:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE
        EE G LA P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQ+EEA RR RIEARK RKLE+ +V   G    D   +D+ D + +E
Subjt:  EEGGELAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNE

Query:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGK-DKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK
        E EP A  S  T YD G +KVTVTTSE+SRE+E +PI K +T +  +    K   K  +P+ K K  K+ +++R   K   KRDKKK
Subjt:  EEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGK-DKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKK

Sequences

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CDS sequence

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ATGGTGAAGAACGACGGAGAAGAAGGAGGCGAGCTTGCACAGCCTCATGCTCGACATATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
GGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGGAAGGAAGCAGAGAAGCAAAAAGAGGAAGCTATGCGGCGGATGCGCATCGAAGCACGAA
AAAAGAGAAAATTAGAAAAGGATCTGGTGCTGCATGGTGGTGTTCTACCAGCTGACCGGGCGGTTGATGACCAGAATGATGATCAAGGGAATGAGGAAGAGGAACCATTA
GCACCACTTTCTGAGGCAACAACGTATGACAATGGAAATGTCAAAGTCACTGTGACAACAAGTGAGGTATCTCGGGAAGACGAAATCGATCCAATTGACAAGCCACAGAC
AGCAACAGTAACAGCTCAGTTTCTAGGAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCTATTCAAGAAAGTTGCAAAACAGAGGGGAAGGCCAAAGCTTC
GAAGTAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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Protein sequence

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MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQKEEAMRRMRIEARKKRKLEKDLVLHGGVLPADRAVDDQNDDQGNEEEEPL
APLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATVTAQFLGKDKKHNLPITKKKLFKKVAKQRGRPKLRSKRDKKKGRKKK

Cucsat.G7810 (gene) of Cucumber (B10) v3 genome