; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7879 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7879
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptiongeneral transcription and DNA repair factor IIH subunit TFB1-1-like
Genome locationctg1556:3190768..3200117
RNA-Seq ExpressionCucsat.G7879
SyntenyCucsat.G7879
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR027079 - TFIIH subunit Tfb1/GTF2H1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54745.2 hypothetical protein Csa_012761 [Cucumis sativus]2.45e-184100Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

XP_011653743.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2 [Cucumis sativus]3.32e-186100Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

XP_016902113.1 PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X4 [Cucumis melo]4.93e-18397.4Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAY SLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDAD+QKRSVKSGER+NGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

XP_031739953.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X3 [Cucumis sativus]1.82e-18395.05Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TK--------------VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TK              VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
Subjt:  TK--------------VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

XP_031739954.1 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X4 [Cucumis sativus]4.60e-18495.05Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TK--------------VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TK              VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
Subjt:  TK--------------VSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

TrEMBL top hitse value%identityAlignment
A0A0A0L1N5 BSD domain-containing protein1.21e-189100Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

A0A1S3C6E8 probable RNA polymerase II transcription factor B subunit 1-1 isoform X15.72e-18297.4Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAY SLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDAD+QKRSVKSGER+NGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

A0A1S4E1K9 probable RNA polymerase II transcription factor B subunit 1-1 isoform X23.61e-18397.4Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAY SLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDAD+QKRSVKSGER+NGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

A0A1S4E1L0 probable RNA polymerase II transcription factor B subunit 1-1 isoform X33.14e-18397.4Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAY SLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDAD+QKRSVKSGER+NGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

A0A1S4E1L2 probable RNA polymerase II transcription factor B subunit 1-1 isoform X42.39e-18397.4Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
        LSQDLNRQGAVVLEGRTIDVDLEDPRTVA+ALVRS+HAVEGNE QTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQ

Query:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
        TKCSLSTTEAY SLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY
Subjt:  TKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLY

Query:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
        TKVSRLKDAM+KIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDAD+QKRSVKSGER+NGYT
Subjt:  TKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT

SwissProt top hitse value%identityAlignment
P32780 General transcription factor IIH subunit 12.7e-0527.78Show/hide
Query:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV------SLLVRPMHQALDAAFQHHDA
        Q++I + +PN  + EL H ++++ ELL+HFWS +P+ T +L  KV ++K         LE  + T +  F+ ++      + LV  + + L  A+     
Subjt:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV------SLLVRPMHQALDAAFQHHDA

Query:  DMQKRSVK
           +R +K
Subjt:  DMQKRSVK

Q3ECP0 General transcription and DNA repair factor IIH subunit TFB1-12.2e-7956.2Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
        L QDLNR  AVVLEGR+IDV+ ED R VA+AL R K   +       + +Q  L+R+SR+  +EDLQAP + P APL IKDPRDYF++QQ N +      
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT

Query:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI
        + G+++     +  EAYG L+ESI EI+++G + P+IKPEV+  V++ LT+ I++ K   GKNP+ES L+ LP  TK+E+LHHW SIQELLKHFWSSYPI
Subjt:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI

Query:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY
        TT+YL+TKV +LKDAM+  Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++ D+Q+R+ KSGER NGY
Subjt:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY

Q960E8 General transcription factor IIH subunit 11.8e-0430.59Show/hide
Query:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQAL
        ++S  + +PN  + EL H ++S+ ELLKHFWS +P T+  L TK+ R+       +  L+  K   +  F ++    + P+  +L
Subjt:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQAL

Q9DBA9 General transcription factor IIH subunit 13.6e-0526.85Show/hide
Query:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV------SLLVRPMHQALDAAFQHHDA
        Q+++ + +PN  + EL H ++++ ELL+HFWS +P+ T +L  KV ++K         LE  + T +  F+ ++      + LV  + + L  A+     
Subjt:  QESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV------SLLVRPMHQALDAAFQHHDA

Query:  DMQKRSVK
           +R +K
Subjt:  DMQKRSVK

Q9M322 General transcription and DNA repair factor IIH subunit TFB1-34.7e-7454.51Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
        L QDLNR  AVVLEGR I+V  ED R VA+AL R+K        +  + +Q  L+R+SR T +EDLQAP + P APL IKDPRDYF++QQ N +      
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT

Query:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI
        +A  +      +  EAYG L+ESI  I+ +G + P+IKPEV+  V++ LT+ IS+ K  LGKNPQES L+ LP  TK+E++HHW SIQEL++HFWSSYPI
Subjt:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI

Query:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVK
        TT+YL TKV +LKDAM+  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++D+Q+R+ K
Subjt:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVK

Arabidopsis top hitse value%identityAlignment
AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)1.6e-8056.2Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
        L QDLNR  AVVLEGR+IDV+ ED R VA+AL R K   +       + +Q  L+R+SR+  +EDLQAP + P APL IKDPRDYF++QQ N +      
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEG------NESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT

Query:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI
        + G+++     +  EAYG L+ESI EI+++G + P+IKPEV+  V++ LT+ I++ K   GKNP+ES L+ LP  TK+E+LHHW SIQELLKHFWSSYPI
Subjt:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI

Query:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY
        TT+YL+TKV +LKDAM+  Y +LE +KE+V +D RHQVSLLVRPM QALDAAF H++ D+Q+R+ KSGER NGY
Subjt:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY

AT3G61420.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)3.4e-7554.51Show/hide
Query:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
        L QDLNR  AVVLEGR I+V  ED R VA+AL R+K        +  + +Q  L+R+SR T +EDLQAP + P APL IKDPRDYF++QQ N +      
Subjt:  LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHA------VEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT

Query:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI
        +A  +      +  EAYG L+ESI  I+ +G + P+IKPEV+  V++ LT+ IS+ K  LGKNPQES L+ LP  TK+E++HHW SIQEL++HFWSSYPI
Subjt:  RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPI

Query:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVK
        TT+YL TKV +LKDAM+  Y  L+ +K++V +D RHQVSLLVRPM QALDAAFQH+++D+Q+R+ K
Subjt:  TTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGATGTAGACTTGGAAGATCCAAGGACCGTTGCAGATGCACTTGTGCGGTCTAAACA
TGCGGTAGAAGGAAATGAGAGCCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTCCTCATAGCCATCCTTTTGCTCCTCTTTGTATCA
AGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTAAGCACTACAGAAGCA
TATGGCTCACTGAGGGAATCCATATCTGAGATCAAGTCCTCTGGATTCAATCATCCCATAATTAAACCGGAAGTTGCACTTATGGTTTATAATGGATTAACTCAAAATAT
TTCTAGTACCAAATATCAACTTGGGAAAAACCCTCAGGAGAGTATTCTGGAGAGTTTGCCAAACCCTACTAAGGAGGAACTGCTACACCATTGGATCTCGATTCAAGAAT
TACTCAAGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCAATGGCCAAAATCTATCGACAGTTAGAGGAGATC
AAGGAAACCGTGGTGGCAGATTTCCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCACCAGGCTCTGGATGCTGCGTTTCAGCATCATGACGCTGACATGCAGAAGAG
ATCAGTAAAGAGTGGAGAAAGGCTTAACGGATACACTTAG
mRNA sequenceShow/hide mRNA sequence
TTGTCACAAGACCTTAATCGTCAAGGTGCAGTTGTTCTTGAAGGCAGAACTATTGATGTAGACTTGGAAGATCCAAGGACCGTTGCAGATGCACTTGTGCGGTCTAAACA
TGCGGTAGAAGGAAATGAGAGCCAGACAGCACTTGATAGGATCTCTAGGATGACAGCGATTGAGGATCTTCAAGCTCCTCATAGCCATCCTTTTGCTCCTCTTTGTATCA
AGGATCCTCGAGATTATTTTGATGCTCAACAAGCAAATGCCATTAAGACATTGGATGATACACGAGCTGGAATGCAACAAACTAAATGCAGTTTAAGCACTACAGAAGCA
TATGGCTCACTGAGGGAATCCATATCTGAGATCAAGTCCTCTGGATTCAATCATCCCATAATTAAACCGGAAGTTGCACTTATGGTTTATAATGGATTAACTCAAAATAT
TTCTAGTACCAAATATCAACTTGGGAAAAACCCTCAGGAGAGTATTCTGGAGAGTTTGCCAAACCCTACTAAGGAGGAACTGCTACACCATTGGATCTCGATTCAAGAAT
TACTCAAGCATTTTTGGTCGTCTTATCCAATCACCACATCATATCTTTATACCAAAGTGAGCAGATTGAAGGATGCAATGGCCAAAATCTATCGACAGTTAGAGGAGATC
AAGGAAACCGTGGTGGCAGATTTCCGCCACCAAGTATCTCTTTTGGTTCGTCCAATGCACCAGGCTCTGGATGCTGCGTTTCAGCATCATGACGCTGACATGCAGAAGAG
ATCAGTAAAGAGTGGAGAAAGGCTTAACGGATACACTTAG
Protein sequenceShow/hide protein sequence
LSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVRSKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEA
YGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEI
KETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT