; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G7897 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7897
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionHigh mobility group B protein 6
Genome locationctg1556:3568405..3569616
RNA-Seq ExpressionCucsat.G7897
SyntenyCucsat.G7897
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]3.04e-12197.91Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]5.47e-12499.48Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]1.02e-11997.38Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

XP_022978293.1 high mobility group B protein 13-like [Cucurbita maxima]6.32e-10384.97Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFV GF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]5.84e-10989.34Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------PTTVSIESCDLSLADELNAVKRKMERLRLDGE
        MQTLHHPL  P+DLPLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENHPP       TT SIESCD SLADELNAVKRK+ERLRLDGE
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP------PTTVSIESCDLSLADELNAVKRKMERLRLDGE

Query:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RTE+MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDS+ FV GF
Subjt:  RTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

TrEMBL top hitse value%identityAlignment
A0A0A0L063 Uncharacterized protein2.65e-12499.48Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

A0A1S3CJ78 high mobility group B protein 64.92e-12097.38Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

A0A5A7SJQ2 High mobility group B protein 61.47e-12197.91Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

A0A5D3CEI7 High mobility group B protein 64.92e-12097.38Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
        MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENHPP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKML

Query:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFV GF
Subjt:  RERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

A0A6J1ISM0 high mobility group B protein 13-like3.06e-10384.97Show/hide
Query:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK
        MQ LH PL  P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL  DANKENHPP      S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+
Subjt:  MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEK

Query:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
        ML+ERD++LELRMKELLQRS+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGENSSLDSSEFV GF
Subjt:  MLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23800.1 HMG (high mobility group) box protein4.9e-0427.5Show/hide
Query:  KIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL
        K +K K E++          E  P P +V  +S   S   +L  ++  +E+++++ ++TE++L+E+D +L  + +EL  R  EQ  L++E+ +L ++KE 
Subjt:  KIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL

Query:  RSYCMRISPIRSLREKEREK
        +          SL + E+EK
Subjt:  RSYCMRISPIRSLREKEREK

AT4G23800.2 HMG (high mobility group) box protein4.9e-0427.5Show/hide
Query:  KIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL
        K +K K E++          E  P P +V  +S   S   +L  ++  +E+++++ ++TE++L+E+D +L  + +EL  R  EQ  L++E+ +L ++KE 
Subjt:  KIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL

Query:  RSYCMRISPIRSLREKEREK
        +          SL + E+EK
Subjt:  RSYCMRISPIRSLREKEREK

AT5G01910.1 unknown protein2.3e-2245.91Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++      F   E  D E SV
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV

AT5G01910.2 unknown protein8.9e-2247.86Show/hide
Query:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR
        SGR+ LQP+N    P    A  +K K        + +  KEN    T++     D SLA+EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR
Subjt:  SGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQR

Query:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
         + Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  SQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGC
CAAAATCATCAAATCCAAACCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGT
CTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGG
ATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGAT
TCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATT
CTTCAGAATTCGTAAGAGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGC
CAAAATCATCAAATCCAAACCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGT
CTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGG
ATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGAT
TCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATT
CTTCAGAATTCGTAAGAGGTTTTTGA
Protein sequenceShow/hide protein sequence
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELR
MKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF