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Cucsat.G7958 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G7958
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotransposon protein
Genome locationctg1556:777198..781574
RNA-Seq ExpressionCucsat.G7958
SyntenyCucsat.G7958
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026115.1 retrotransposon protein [Cucumis melo var. makuwa]3.35e-3682.05Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV ASDR RYRTRKGEVTTNVLGVCDTK DFV++L+GWEGS ADS IL DA+SRPNRL+VPK  YYL DAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

KAA0035868.1 retrotransposon protein [Cucumis melo var. makuwa]9.82e-3767.35Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPNT----------TIPPTRVAW
        YIKVNV ASDR RYRTRKGEV TNVLGVCDTK DFV++L+GWEGS ADS IL DA+SRPN L+VPK  YYL D GYPN           T+  TR+AW
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPNT----------TIPPTRVAW

KAA0064261.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.24e-3780.77Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV  SDR RYRTRKGEV TNVLGVCDTK DFV++L+GWEGS ADS ILHDAISRPN L+VPK  YYL DAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

KAA0065820.1 retrotransposon protein [Cucumis melo var. makuwa]2.68e-3678.21Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV   DRP +RTRKGE+TTNVLGVCDTKRDFV++L+GWEGS ADS IL DAISR N L+VPK  YYLCDAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]2.46e-3682.05Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNVSA+DRPRYRTRKGEV TNVLG CDTK DFVF+L GWEGS ADS IL DAISR N L+VPK  YYLCDAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

TrEMBL top hitse value%identityAlignment
A0A1S3C1U8 putative nuclease HARBI11.19e-3682.05Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNVSA+DRPRYRTRKGEV TNVLG CDTK DFVF+L GWEGS ADS IL DAISR N L+VPK  YYLCDAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

A0A5A7SNV3 Retrotransposon protein1.62e-3682.05Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV ASDR RYRTRKGEVTTNVLGVCDTK DFV++L+GWEGS ADS IL DA+SRPNRL+VPK  YYL DAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

A0A5A7SZ73 Retrotransposon protein4.75e-3767.35Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPNT----------TIPPTRVAW
        YIKVNV ASDR RYRTRKGEV TNVLGVCDTK DFV++L+GWEGS ADS IL DA+SRPN L+VPK  YYL D GYPN           T+  TR+AW
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPNT----------TIPPTRVAW

A0A5A7VF38 Retrotransposon protein1.30e-3678.21Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV   DRP +RTRKGE+TTNVLGVCDTKRDFV++L+GWEGS ADS IL DAISR N L+VPK  YYLCDAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

A0A5D3D546 Putative nuclease HARBI13.99e-3780.77Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        YIKVNV  SDR RYRTRKGEV TNVLGVCDTK DFV++L+GWEGS ADS ILHDAISRPN L+VPK  YYL DAGYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein7.9e-0731.65Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRV-PKRLYYLCDAGYPN
        ++ V V    +  Y  R    + N++ +CD K  F +I +G  GS  D+ +L  A    +   + P   YYL D+GYPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRV-PKRLYYLCDAGYPN

AT5G28950.1 unknown protein1.1e-1144.78Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISR-PNRLRVPK
        +I   VS    P +R RKG+++ N+L  C+   +F+++LSGWEGS  DS +L+DA++R  NRL VP+
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISR-PNRLRVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.8e-0443.18Show/hide
Query:  FVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        F+++LSGWEGS  DS +L DA+          R +YL D G+ N
Subjt:  FVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)8.1e-1238.46Show/hide
Query:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN
        +I V V   ++  +R   G +T NVL        F ++L+GWEGS +D  +L+ A++R N+L+VP+  YY+ D  YPN
Subjt:  YIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACATAAAAGTAAACGTGTCCGCAAGTGATCGACCTAGATATCGAACACGGAAGGGCGAAGTGACGACGAATGTTCTTGGTGTATGCGATACAAAAAGGGACTTCGT
TTTCATCTTATCAGGCTGGGAAGGTTCAACAGCTGATTCTGGTATCCTTCACGATGCCATTTCTAGACCCAATAGACTAAGGGTTCCTAAGAGGTTGTACTACCTCTGTG
ATGCGGGGTACCCAAATACAACGATACCACCTACAAGAGTGGCGTGGCAGTGGAAATGCTCCAACTACATCGAAGGAGTTCTTCAACATGAAACACTCATCTGCACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACATAAAAGTAAACGTGTCCGCAAGTGATCGACCTAGATATCGAACACGGAAGGGCGAAGTGACGACGAATGTTCTTGGTGTATGCGATACAAAAAGGGACTTCGT
TTTCATCTTATCAGGCTGGGAAGGTTCAACAGCTGATTCTGGTATCCTTCACGATGCCATTTCTAGACCCAATAGACTAAGGGTTCCTAAGAGGTTGTACTACCTCTGTG
ATGCGGGGTACCCAAATACAACGATACCACCTACAAGAGTGGCGTGGCAGTGGAAATGCTCCAACTACATCGAAGGAGTTCTTCAACATGAAACACTCATCTGCACGTAA
Protein sequenceShow/hide protein sequence
MYIKVNVSASDRPRYRTRKGEVTTNVLGVCDTKRDFVFILSGWEGSTADSGILHDAISRPNRLRVPKRLYYLCDAGYPNTTIPPTRVAWQWKCSNYIEGVLQHETLICT