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Cucsat.G80 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G80
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionprotein LOL1 isoform X1
Genome locationctg1:1269811..1271349
RNA-Seq ExpressionCucsat.G80
SyntenyCucsat.G80
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]9.40e-7596.58Show/hide
Query:  SYVSQFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTM
        ++ S FIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTM
Subjt:  SYVSQFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTM

Query:  ARLVCSGCYTLLMYSRG
        ARLVCSGCYTLLMYSRG
Subjt:  ARLVCSGCYTLLMYSRG
XP_008448702.2 PREDICTED: protein LSD1 isoform X2 [Cucumis melo]1.98e-4096.97Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]1.63e-6894.39Show/hide
Query:  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT
        LSSSSKSR GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT
Subjt:  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT

Query:  LLMYSRG
        LLMYSRG
Subjt:  LLMYSRG
XP_031738784.1 protein LSD1 [Cucumis sativus]3.24e-42100Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
XP_038903355.1 protein LSD1-like [Benincasa hispida]3.45e-3687.88Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        MPFPPVTCC+N I+CSGCK LLIYPAGAT ICCALCH V+PVPTSGLTMARLVCSGC+TLLMYSRG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
TrEMBL top hitse value%identityAlignment
A0A0A0L592 zf-LSD1 domain-containing protein2.66e-55100Show/hide
Query:  RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTS
        RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTS
Subjt:  RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTS
A0A1R3I3V3 Zinc finger, LSD1-type2.46e-2464.62Show/hide
Query:  PFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        P PP    Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Subjt:  PFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
A0A1S3BJQ2 protein LSD1 isoform X29.57e-4196.97Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
A0A1S3BKC0 protein LOL1 isoform X17.89e-6994.39Show/hide
Query:  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT
        LSSSSKSR GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT
Subjt:  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYT

Query:  LLMYSRG
        LLMYSRG
Subjt:  LLMYSRG
A0A6J1CWA3 protein LSD1-like7.39e-3377.27Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        MP PPVTCCQ++++CSGCKNLLIYP GATSICC LCH+V+PVPT GL MARLVC GC+TLL++SRG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
SwissProt top hitse value%identityAlignment
P94077 Protein LSD11.4e-1049.15Show/hide
Query:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG
        Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Subjt:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG
Q0J7V9 Protein LSD14.7e-1963.64Show/hide
Query:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        +PF P    Q+Q++CSGC+NLL+YPAGATS+CCA+C  VT VP  G  MA+LVC GC+TLLMY RG
Subjt:  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Q2QMB3 Protein LOL27.7e-1457.89Show/hide
Query:  QNQIMCSGCKNLLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSR
        Q+QI+C GC+N+L+YP GA S+CCA+CHAV +  P+ G+ +A L+C GC TLLMY+R
Subjt:  QNQIMCSGCKNLLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSR
Q6ASS2 Protein LOL31.9e-1256.9Show/hide
Query:  QNQIMCSGCKNLLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSR
        Q+QI+C GC+++L YP+GA S+CCALC A+T  P P   + MA L+C GC TLLMY+R
Subjt:  QNQIMCSGCKNLLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSR
Q93ZB1 Protein LOL11.5e-1766.67Show/hide
Query:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Subjt:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 13.7e-1960Show/hide
Query:  NITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        N   + F   T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Subjt:  NITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
AT1G32540.2 lsd one like 11.1e-1866.67Show/hide
Query:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Subjt:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
AT1G32540.3 lsd one like 11.1e-1866.67Show/hide
Query:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
        T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Subjt:  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
AT4G20380.1 LSD1 zinc finger family protein9.7e-1249.15Show/hide
Query:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG
        Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Subjt:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG
AT4G20380.2 LSD1 zinc finger family protein9.7e-1249.15Show/hide
Query:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG
        Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Subjt:  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGA
CAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTC
AAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGC
TTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGG
mRNA sequenceShow/hide mRNA sequence
CATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGA
CAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTC
AAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGC
TTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGG
Protein sequenceShow/hide protein sequence
HWYYLVQFSFDFLSYVSQFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
LTMARLVCSGCYTLLMYSRG