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Cucsat.G8061 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G8061
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionRetrotransposon protein
Genome locationctg1556:3609258..3612515
RNA-Seq ExpressionCucsat.G8061
SyntenyCucsat.G8061
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006412 - translation (biological process)
GO:0034470 - ncRNA processing (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060843.1 uncharacterized protein E6C27_scaffold137G00750 [Cucumis melo var. makuwa]3.60e-5176.92Show/hide
Query:  MRNESALRQRNMCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTF
        MRNESALR RN+CSMT LRD ATGGRCKT VEM S TA+DIEEDDMDINLE+FDIPNP+ L+PPSG+D+SSTPTSMAHD  SSR S KR SY  DLMDTF
Subjt:  MRNESALRQRNMCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTF

Query:  RTDMRETSKKIGKIVAW
           M +TSK+IGKIVAW
Subjt:  RTDMRETSKKIGKIVAW

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]3.96e-5078.38Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT +EM  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKRRSYSEDLMDTFR  MRETSK+I KI AWQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES IH
Subjt:  KVKIEIESYIH

KAE8649593.1 hypothetical protein Csa_012732 [Cucumis sativus]1.48e-5696.91Show/hide
Query:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIH
        MDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK RSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIH
Subjt:  MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIH

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]7.01e-4979.28Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT VEM SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKRRSYS DLMDTFR  MRETSK+IGKI  WQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES +H
Subjt:  KVKIEIESYIH

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]3.84e-5078.38Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT +EM  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKRRSYSEDLMDTFR  MRETSK+I KI AWQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES IH
Subjt:  KVKIEIESYIH

TrEMBL top hitse value%identityAlignment
A0A0A0L1J1 Uncharacterized protein6.84e-7397.46Show/hide
Query:  MCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKI
        MCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK RSYSEDLMDTFRTDMRETSKKI
Subjt:  MCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKI

Query:  GKIVAWQKVKIEIESYIH
        GKIVAWQKVKIEIESYIH
Subjt:  GKIVAWQKVKIEIESYIH

A0A1S3CC17 uncharacterized protein LOC1034992481.86e-5078.38Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT +EM  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKRRSYSEDLMDTFR  MRETSK+I KI AWQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES IH
Subjt:  KVKIEIESYIH

A0A5A7UY02 Uncharacterized protein1.74e-5176.92Show/hide
Query:  MRNESALRQRNMCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTF
        MRNESALR RN+CSMT LRD ATGGRCKT VEM S TA+DIEEDDMDINLE+FDIPNP+ L+PPSG+D+SSTPTSMAHD  SSR S KR SY  DLMDTF
Subjt:  MRNESALRQRNMCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTF

Query:  RTDMRETSKKIGKIVAW
           M +TSK+IGKIVAW
Subjt:  RTDMRETSKKIGKIVAW

A0A5A7VGQ0 Retrotransposon protein1.92e-5078.38Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT +EM  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKRRSYSEDLMDTFR  MRETSK+I KI AWQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES IH
Subjt:  KVKIEIESYIH

A0A5D3C7T4 Uncharacterized protein3.39e-4979.28Show/hide
Query:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ
        RDRATGGRCKT VEM SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKRRSYS DLMDTFR  MRETSK+IGKI  WQ
Subjt:  RDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKKIGKIVAWQ

Query:  KVKIEIESYIH
        + K+EIES +H
Subjt:  KVKIEIESYIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAATGAAAGTGCACTGAGGCAAAGAAACATGTGTTCGATGACTAGGTTAAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACTCACAGAC
TGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAA
CAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCGGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAA
ATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACAT
mRNA sequenceShow/hide mRNA sequence
ATGAGGAATGAAAGTGCACTGAGGCAAAGAAACATGTGTTCGATGACTAGGTTAAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACTCACAGAC
TGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAA
CAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCGGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAA
ATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACAT
Protein sequenceShow/hide protein sequence
MRNESALRQRNMCSMTRLRDRATGGRCKTLVEMDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRRSYSEDLMDTFRTDMRETSKK
IGKIVAWQKVKIEIESYIH