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Cucsat.G823 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G823
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationctg1:2169238..2170336
RNA-Seq ExpressionCucsat.G823
SyntenyCucsat.G823
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]4.53e-8496.92Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHS+SQGIWS NHDQEGSFDKNNNDNILHNKENI+GIEMLKGMK+DGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_022154042.1 uncharacterized protein LOC111021396 [Momordica charantia]5.11e-2656.3Show/hide
Query:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPMKE
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  I Q   +   DQ    +++ N NI+H   + V  GI +LKGMKK   RL MEF MKE
Subjt:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPMKE

Query:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        K  +M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]1.80e-2451.13Show/hide
Query:  FFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKE--------
        FFL LLF S+ LHACDA  L+   SS   S +     IS G  +   ++     K+N+ + + N    VGIE+LKGMKK   RL ME P+++        
Subjt:  FFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKE--------

Query:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]4.03e-5478.46Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLK-GMKKDGSRLVMEFPMKEKVM
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HSISQGIW+   DQ E SF+++N+D + + KE IVGIEMLK GMKK GSRLVMEFPMKEKV+
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLK-GMKKDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]5.81e-5679.07Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMN
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HSISQGIW+   DQ E SF+++N+D + + KE IVGIEMLKGMKK GSRLVMEFPMKEKV+N
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMN

Query:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP
        SKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein2.20e-8496.92Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHS+SQGIWS NHDQEGSFDKNNNDNILHNKENI+GIEMLKGMK+DGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2J6MHI4 Uncharacterized protein1.83e-0835.38Show/hide
Query:  LHACDASRLRFFQSSN------FVSRINELHSISQG--IWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLK-GMKKDG----SRLVMEFPMK---EKVM
        +HACD+  L  F            S+  E+ + ++G     TN + + S  +  ++ +  +K N + +++ + G K  G    +RL ME   K   EK+ 
Subjt:  LHACDASRLRFFQSSN------FVSRINELHSISQG--IWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLK-GMKKDG----SRLVMEFPMK---EKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSK++ V ED+ VMDYAQPHRKPPIHN +P
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1DKL1 uncharacterized protein LOC1110213962.47e-2656.3Show/hide
Query:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPMKE
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  I Q   +   DQ    +++ N NI+H   + V  GI +LKGMKK   RL MEF MKE
Subjt:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPMKE

Query:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        K  +M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985211.69e-2253.33Show/hide
Query:  FLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKE--------
        FL LLF S+ LHACDA  L+   SS   S +     IS G      DQ + S DK+ + N + + EN VGIE+LKGMKK   RL ME P+++        
Subjt:  FLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKE--------

Query:  --KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
          KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  --KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

M1A0Y5 Uncharacterized protein1.74e-0861.7Show/hide
Query:  SRLVMEFPM----KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEK
        SRL++E P+    +E+ +NS E E+ ED+VVMDYAQPHRKPPIHN K
Subjt:  SRLVMEFPM----KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEK

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 17.4e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).5.2e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAACAAAACCCTCTTCTCTTTCACCTTTTCTCTCTTTTTCCTTTCTCATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGA
CGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATTTCTCAAGGGATTTGGAGTACAAATCATGATCAGGAGGGAAGTT
TCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTGTTGGAATTGAAATGTTAAAGGGAATGAAGAAAGATGGAAGCAGATTGGTAATGGAGTTTCCA
ATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTA
G
mRNA sequenceShow/hide mRNA sequence
CAAACAAAACCCTCTTCTCTTTCACCTTTTCTCTCTTTTTCCTTTCTCATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGA
CGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATTTCTCAAGGGATTTGGAGTACAAATCATGATCAGGAGGGAAGTT
TCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTGTTGGAATTGAAATGTTAAAGGGAATGAAGAAAGATGGAAGCAGATTGGTAATGGAGTTTCCA
ATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTA
G
Protein sequenceShow/hide protein sequence
QTKPSSLSPFLSFSFLMAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFP
MKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP