; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G8234 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G8234
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase II subunit 4-like
Genome locationctg1557:3341552..3345251
RNA-Seq ExpressionCucsat.G8234
SyntenyCucsat.G8234
Gene Ontology termsGO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0031990 - mRNA export from nucleus in response to heat stress (biological process)
GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR006590 - RNA polymerase Rpb4/RPC9, core
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141497.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus]9.74e-90100Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
XP_008459458.1 PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo]3.97e-8998.55Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
XP_022939401.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata]6.33e-8695.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGR H+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
XP_038884885.1 DNA-directed RNA polymerase II subunit 4 [Benincasa hispida]1.28e-8594.93Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGRVH+DEAIEKMLNDLSLIK+FE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
XP_038890773.1 DNA-directed RNA polymerase II subunit 4-like [Benincasa hispida]3.27e-8897.83Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
TrEMBL top hitse value%identityAlignment
A0A1S3CA78 DNA-directed RNA polymerase II subunit 4-like1.92e-8998.55Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
A0A5A7T811 DNA-directed RNA polymerase II subunit 4-like1.92e-8998.55Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQ+SQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEATSIVPSLKTKGRVH+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
A0A5D3C019 DNA-directed RNA polymerase II subunit 48.79e-8694.2Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGRVH+DEAIEKMLNDLSLIK+FE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
A0A6J1FFS7 DNA-directed RNA polymerase II subunit 4-like3.07e-8695.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGR H+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
A0A6J1JVN3 DNA-directed RNA polymerase II subunit 4-like3.07e-8695.65Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ +EDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA S+VPSLKTKGR H+DEAIEKMLNDLSLIKKFE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
SwissProt top hitse value%identityAlignment
O15514 DNA-directed RNA polymerase II subunit RPB41.1e-2142.34Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
         EE+ +++PSL  +GR  EDE ++++L+D+   + F+
Subjt:  VEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
O48890 DNA-directed RNA polymerase II subunit 49.2e-6690.58Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGR H+DEAIEKMLNDLSL+K+FE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
Q54S04 DNA-directed RNA polymerase II subunit rpb43.8e-1936.73Show/hide
Query:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAED-------------PTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE
        +EEE+   LK   +   AK L+N EV+++LEH+    +    +               N + + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE
Subjt:  EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAED-------------PTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFE

Query:  LCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKF
        +  L NLCPE  +EA S++PSLK      ED+ ++ +L++LS ++KF
Subjt:  LCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKF
Q9D7M8 DNA-directed RNA polymerase II subunit RPB41.1e-2142.34Show/hide
Query:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET
        +G+ EE+A++L    EF  A+ L+N EV ++LEH+ +Q  + AED   ++S+VF K+L Y  RFSR+KN + +  VR +L + +L +FEL  L NLCPET
Subjt:  SGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPET

Query:  VEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
         EE+ +++PSL  +GR  EDE ++++L+D+   + F+
Subjt:  VEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
Q9VEA5 DNA-directed RNA polymerase II subunit Rpb46.1e-1738.1Show/hide
Query:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA
        +E+AA+L+   EF  A+ L+  EV ++L+H+  + Q  + D   + S+VF K+  Y   F ++KN + +   R +L + +L +FEL  LGNLCPE  EEA
Subjt:  EENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEA

Query:  TSIVPSLKTKGRVHEDEAIEKMLNDL
         +++PSL  +GR  EDE + ++L+D+
Subjt:  TSIVPSLKTKGRVHEDEAIEKMLNDL
Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein4.0e-1637.29Show/hide
Query:  AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHE
        A+C+M+CE   IL+    QL   +EDP+ ++   ++++L YV+    Y NP +VR+V E L  Y +++ E+CV+ N   E+V+E  + +PSLKTK  V  
Subjt:  AKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHE

Query:  DEAIEKMLNDLSLIKKFE
        ++ ++  L +LS +KK E
Subjt:  DEAIEKMLNDLSLIKKFE
AT5G09920.1 RNA polymerase II, Rpb4, core protein6.6e-6790.58Show/hide
Query:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE
        MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ +EDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPE
Subjt:  MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPE

Query:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE
        TVEEA ++VPSLKTKGR H+DEAIEKMLNDLSL+K+FE
Subjt:  TVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTGGAACACAAGTA
TGAGCAGCTTCAACAAAGGGCTGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAGAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAGAACCCCGATGCTG
TTAGACAAGTCCGAGAAATTCTAAGCAGATATCAGCTAGCTGAGTTCGAGTTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCA
TCTTTGAAGACTAAGGGAAGAGTGCATGAGGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTGGAACACAAGTA
TGAGCAGCTTCAACAAAGGGCTGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAGAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAGAACCCCGATGCTG
TTAGACAAGTCCGAGAAATTCTAAGCAGATATCAGCTAGCTGAGTTCGAGTTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCA
TCTTTGAAGACTAAGGGAAGAGTGCATGAGGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTTGAGTAG
Protein sequenceShow/hide protein sequence
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVP
SLKTKGRVHEDEAIEKMLNDLSLIKKFE