CuGenDBv2

Gene ID	Cucsat.G8432
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	Toprim domain-containing protein
Genome location	ctg1557:2114027..2120071
RNA-Seq Expression	Cucsat.G8432
Synteny	Cucsat.G8432
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

1.74e-257

91.17

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        RIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  RIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

9.22e-288

99.22

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        +ILATDSDVPGQALAEELARRLGKNRCWRV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

1.21e-255

90.93

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQ V IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV

Query:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SRIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

XP_031736130.1 primase homolog protein isoform X2 [Cucumis sativus]

1.59e-251

91.47

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPK    R
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY
        L  +  S +    G+  +  C   +  W   IFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        +ILATDSDVPGQALAEELARRLGKNRCWRV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

XP_031736131.1 primase homolog protein isoform X3 [Cucumis sativus]

1.39e-264

92.51

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDE                           VTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        +ILATDSDVPGQALAEELARRLGKNRCWRV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

4.46e-288

99.22

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSR

Query:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        +ILATDSDVPGQALAEELARRLGKNRCWRV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  IILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

A0A1S3BDI8 primase homolog protein isoform X2

8.40e-258

91.17

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQVTIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVS

Query:  RIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        RIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  RIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

A0A1S4DT27 primase homolog protein isoform X4

1.38e-233

91.67

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQ V IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV

Query:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANE
        SRIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANE
Subjt:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANE

A0A1S4DT34 primase homolog protein isoform X3

7.46e-239

87.31

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQ V IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEK                V
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV

Query:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SRIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

A0A1S4DTX2 primase homolog protein isoform X1

5.87e-256

90.93

Show/hide

Query:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRFL RFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFL-RFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQE LERNVVMQ+ GRQ V IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQLAGRQ-VTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDYLDKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKV

Query:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SRIILATDSDVPGQALAEELARRLGK+RCWRV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

4.8e-89

55.36

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEI
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA      I K+  + + E + LEPLCDE+  YF+ R IS++ 
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEI

Query:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +P  
Subjt:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI

Query:  EKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL
        +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK+AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL

F4I6E6 Primase homolog protein

3.2e-85

52.79

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Query:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE
        LM ++   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DGKL + +  GK+ + +   + ES+ LEPLCDE
Subjt:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE

Query:  LISYFSMRMISQEILERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R IS + LERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSMRMISQEILERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF
        GAP  VS+  +P   KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK+AI +A+ 
Subjt:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF

Query:  YQLSS
        Y L S
Subjt:  YQLSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

2.3e-86

52.79

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Query:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE
        LM ++   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DGKL + +  GK+ + +   + ES+ LEPLCDE
Subjt:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE

Query:  LISYFSMRMISQEILERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R IS + LERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSMRMISQEILERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF
        GAP  VS+  +P   KDTA++Y+W+C DYL K SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEVL+  GP  LK+AI +A+ 
Subjt:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF

Query:  YQLSS
        Y L S
Subjt:  YQLSS

AT1G30680.1 toprim domain-containing protein

3.4e-90

55.36

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Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEI
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA      I K+  + + E + LEPLCDE+  YF+ R IS++ 
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEI

Query:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +P  
Subjt:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI

Query:  EKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL
        +KDT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEVL+  GP  LK+AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL

Sequences

Show/hide sequences

CDS sequence

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AAGAAAGATACCCAATCCTTTTCCAACCGTCATAACTTCCAATATACAGAGAAAACTTTGTGTGTGTATGCGAAGCAGATAAGGCTGCTTCCACTCTGCTCTTCCATTTC
TCTCCAAATGCCAATAAACTCAACTTTCACTTTCAATTCTAATTTCAACTTCCAATTCAAATTCATTAATCATCGCTCTTTCCCTTTCTCTCATTCTCTAAACAATTTCT
CCATTTCCTCTTCCCCTTCCCGATTCCTTCGGTTCTGCACTACCAGACTATCTTCCGCCGTTTCTCATGCTCCCCCCTCCCCGCCCCCAGTGAAGCATCTTATGGAGAGG
ATGGATCTTGTTGGAATAGTCTGTGATGAACATTGTATCCCTGGAAAATACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCT
TCATGTGATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTTTGAGTGTGGTTGGGCAGGGCAGATATTTGCAGATGGCAAATTGGCATTTAATGGATTCGGCA
AAATTACGAAAATGGTTGGACGGAGTTCCAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAATTCTA
GAACGGAATGTTGTTATGCAATTAGCTGGTCGTCAGGTTACTATTGCATTTACTTATCGACAAAATGGACAGCTTGTTGGTTGCAAGTACCGAACCATGGACAAGAGATT
TTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAG
CTGGTTTCCTGAATTGTATTAGTGTTCCTGGTGGTGCCCCAAACAAGGTTTCAACTGATACAGTTCCACCAATTGAAAAGGATACTGCATACCAATATTTGTGGAGCTGC
AAAGACTACTTAGATAAGGTTTCCCGCATTATCTTGGCCACTGATAGCGATGTACCGGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAAAATAGATGTTG
GCGAGTATATTGGCCATATAAAGATGGCTTCAACCGTTTTAAGGATGCCAATGAGGTTCTAGTGCACTTGGGACCAGATGCTTTGAAGAAGGCAATTGAAGATGCCAAGT
TTTACCAACTCTCAAGTTCAAATCAAATACAAAAAGAAGAGGACCTTTTCCAAGAGCATCGAGTGGAGTAA

mRNA sequence

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Protein sequence

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KKDTQSFSNRHNFQYTEKTLCVYAKQIRLLPLCSSISLQMPINSTFTFNSNFNFQFKFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMER
MDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQEIL
ERNVVMQLAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSC
KDYLDKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

Cucsat.G8432 (gene) of Cucumber (B10) v3 genome