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Cucsat.G8564 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G8564
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationctg1557:4336440..4341173
RNA-Seq ExpressionCucsat.G8564
SyntenyCucsat.G8564
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER27960.1 DNA-directed RNA polymerase subunit beta' [Striga asiatica]8.76e-0637.68Show/hide
Query:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFA
        + Q+IL + L+R K   R   +L+H    ++CW++ L +VRRE+   F +  RP+ V +VQKP + H A
Subjt:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFA

RYQ85798.1 hypothetical protein Ahy_B10g105406 [Arachis hypogaea]7.49e-0548.98Show/hide
Query:  MLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFAG
        ML+H S   QC I+ +D +RREDY    ST RP  + EVQ+PRKR+   
Subjt:  MLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFAG

TrEMBL top hitse value%identityAlignment
A0A444X7X1 Uncharacterized protein3.63e-0548.98Show/hide
Query:  MLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFAG
        ML+H S   QC I+ +D +RREDY    ST RP  + EVQ+PRKR+   
Subjt:  MLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFAG

A0A5A7P5A9 DNA-directed RNA polymerase subunit beta4.24e-0637.68Show/hide
Query:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFA
        + Q+IL + L+R K   R   +L+H    ++CW++ L +VRRE+   F +  RP+ V +VQKP + H A
Subjt:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFA

A0A6N2KHG3 Uncharacterized protein2.67e-1150Show/hide
Query:  FNLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKP
        F LQVILRQ L+ FK+T   FY+L+H S  ++ WI+FL  + RE+ QSF+   RP+SV ++Q P
Subjt:  FNLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKP

T1MAA3 Uncharacterized protein1.20e-0538.46Show/hide
Query:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRK
        ++QV+L Q+LE  ++T RH  ML+H ++ +Q W+Q + +V  ED  + ++  RP+ V EV+ P K
Subjt:  NLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTCAATCTTCAGGTAATTCTTCGCCAGTACCTTGAACGCTTCAAATCCACAGAACGACATTTCTATATGCTTATCCATTCTTCCTTTTCTAATCAGTGCTGGAT
CCAGTTTCTCGACATAGTTCGTCGTGAAGACTATCAGTCTTTCTCCTCCACATGCCGACCAGAGTCCGTCTATGAAGTTCAGAAGCCCCGAAAGCGTCACTTCGCTGGGA
GACGGATGCACATCATACGAACGAGCATCATACGAACGAATGTGACATGTATAAAAGGTAGCTTACTCACCTTAGCATTTTTACACTACAAAAGTAGATTTGTTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTCAATCTTCAGGTAATTCTTCGCCAGTACCTTGAACGCTTCAAATCCACAGAACGACATTTCTATATGCTTATCCATTCTTCCTTTTCTAATCAGTGCTGGAT
CCAGTTTCTCGACATAGTTCGTCGTGAAGACTATCAGTCTTTCTCCTCCACATGCCGACCAGAGTCCGTCTATGAAGTTCAGAAGCCCCGAAAGCGTCACTTCGCTGGGA
GACGGATGCACATCATACGAACGAGCATCATACGAACGAATGTGACATGTATAAAAGGTAGCTTACTCACCTTAGCATTTTTACACTACAAAAGTAGATTTGTTACTTGA
Protein sequenceShow/hide protein sequence
MPFNLQVILRQYLERFKSTERHFYMLIHSSFSNQCWIQFLDIVRREDYQSFSSTCRPESVYEVQKPRKRHFAGRRMHIIRTSIIRTNVTCIKGSLLTLAFLHYKSRFVT