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Cucsat.G8825 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G8825
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionCCHC-type domain-containing protein
Genome locationctg1592:84971..86633
RNA-Seq ExpressionCucsat.G8825
SyntenyCucsat.G8825
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032067.1 reverse transcriptase [Cucumis melo var. makuwa]8.14e-1570.69Show/hide
Query:  LLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT
        LLNIHQ  QR L    Y QEDQEIRMKVDL TFN R+DVE FLDWIKN E  F Y+NT
Subjt:  LLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT

KAA0038343.1 uncharacterized protein E6C27_scaffold270G002190 [Cucumis melo var. makuwa]1.35e-1969.57Show/hide
Query:  DDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP
        DDSDSSDED LLNIHQ+ QR +    Y QEDQEI MKVDL TF+ R+DVEKFLDWIK  E  F Y NTP
Subjt:  DDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP

KAA0045133.1 hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa]2.55e-2173.02Show/hide
Query:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMK
        QE PR+Q +H++NNQLYGNNL GY++DDS+SSDED LLNIHQ+ QR LDF  Y QEDQEIRMK
Subjt:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMK

KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.20e-2267.09Show/hide
Query:  QLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTN
        QL    ++    D+SDSSDED LLNIHQ+ QR L F  YNQEDQEIRMKVDL TFN R+DVEKFLDWIKN E  F Y N
Subjt:  QLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTN

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]1.48e-3168.42Show/hide
Query:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP
        QE+ RNQ IH++NN+LYGNN+ G  + DSDSSDED LLNIHQ+ Q+ L    Y QEDQEIRMKVDL TFN R+DVEKFLDWIKN E  F Y NTP
Subjt:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP

TrEMBL top hitse value%identityAlignment
A0A5D3BB35 CCHC-type domain-containing protein6.55e-2069.57Show/hide
Query:  DDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP
        DDSDSSDED LLNIHQ+ QR +    Y QEDQEI MKVDL TF+ R+DVEKFLDWIK  E  F Y NTP
Subjt:  DDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP

A0A5D3BDY0 Reverse transcriptase8.69e-0672.73Show/hide
Query:  MKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT
        MKVDL TFN R+DVEKFL+WI N E SF Y NT
Subjt:  MKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT

A0A5D3CPS9 Reverse transcriptase3.94e-1570.69Show/hide
Query:  LLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT
        LLNIHQ  QR L    Y QEDQEIRMKVDL TFN R+DVE FLDWIKN E  F Y+NT
Subjt:  LLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNT

A0A5D3DIZ0 Uncharacterized protein1.24e-2173.02Show/hide
Query:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMK
        QE PR+Q +H++NNQLYGNNL GY++DDS+SSDED LLNIHQ+ QR LDF  Y QEDQEIRMK
Subjt:  QEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMK

A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein1.55e-2267.09Show/hide
Query:  QLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTN
        QL    ++    D+SDSSDED LLNIHQ+ QR L F  YNQEDQEIRMKVDL TFN R+DVEKFLDWIKN E  F Y N
Subjt:  QLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAACCCATCGAAGAAGTCGCACCAATTCAACCTCCAAGAAGTACCAAGAAACCAAACTATACACGTCTACAACAATCAACTCTATGGGAACAACCTACTAGGCTA
CATGATGGATGATTCCGACTCTTCCGATGAAGACAAACTGCTGAATATTCATCAAGATCTGCAAAGAAGTCTCGATTTTTGGTCATACAATCAAGAAGATCAAGAAATAA
GAATGAAGGTGGATCTTCTTACATTCAACGATCGAGTGGATGTTGAAAAGTTTCTTGATTGGATTAAGAACGGAGAAATTTCTTTTGGCTACACTAATACTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAACCCATCGAAGAAGTCGCACCAATTCAACCTCCAAGAAGTACCAAGAAACCAAACTATACACGTCTACAACAATCAACTCTATGGGAACAACCTACTAGGCTA
CATGATGGATGATTCCGACTCTTCCGATGAAGACAAACTGCTGAATATTCATCAAGATCTGCAAAGAAGTCTCGATTTTTGGTCATACAATCAAGAAGATCAAGAAATAA
GAATGAAGGTGGATCTTCTTACATTCAACGATCGAGTGGATGTTGAAAAGTTTCTTGATTGGATTAAGAACGGAGAAATTTCTTTTGGCTACACTAATACTCCATAA
Protein sequenceShow/hide protein sequence
MYNPSKKSHQFNLQEVPRNQTIHVYNNQLYGNNLLGYMMDDSDSSDEDKLLNIHQDLQRSLDFWSYNQEDQEIRMKVDLLTFNDRVDVEKFLDWIKNGEISFGYTNTP