; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G8936 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G8936
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationctg1635:2124624..2126963
RNA-Seq ExpressionCucsat.G8936
SyntenyCucsat.G8936
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]6.09e-103100Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]2.04e-10198.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]3.36e-9189.61Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]3.12e-8788.31Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.68e-10098.05Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQ+NAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELA+PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein2.95e-103100Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like9.87e-10298.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding9.87e-10298.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like1.62e-9189.61Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like2.15e-8787.66Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284406.5e-4467.42Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE      F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein7.9e-4566.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV
        GR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein7.9e-4566.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV
        GR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein5.8e-4865.91Show/hide
Query:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK
        + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDK
Subjt:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK

Query:  WGRIELADPEDFVVKEDNNLSLVEYELVNVAE
        WGR+E+ +P  F VKED N+SL+EYELVNV E
Subjt:  WGRIELADPEDFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein1.6e-5066.03Show/hide
Query:  GKSPTPASQELQQTNAAPRPGL----RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG
        G++P P S   + +   P        +KPVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG
Subjt:  GKSPTPASQELQQTNAAPRPGL----RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG

Query:  TTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
         T+ LRNAKIDMFKGSMRLAVDKWGRIE  +P D  VKEDNNLSLVEYELVNV EE
Subjt:  TTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein4.6e-4567.42Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE      F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAA
ACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGT
GCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAA
ACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGT
GCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAATGA
Protein sequenceShow/hide protein sequence
MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
FKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE