; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G9083 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9083
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptiontranslation initiation factor IF-1, chloroplastic
Genome locationctg1635:2400298..2401549
RNA-Seq ExpressionCucsat.G9083
SyntenyCucsat.G9083
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]7.31e-5994.06Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.78e-4778.22Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSHLS+ SI FP+SQFLH PSH S +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

XP_008452461.1 PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo]4.09e-5994.06Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]6.41e-6299.01Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAF LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]5.37e-5488.12Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSST LLQFPLLQSHFRPPSTL FPAVKSHLS+ SI+FPT+QFLH PSHAS  F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein3.10e-6299.01Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAF LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

A0A1S3BT96 translation initiation factor IF-1, chloroplastic1.98e-5994.06Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

A0A5A7V7J3 Translation initiation factor IF-13.54e-5994.06Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like2.00e-4676.24Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

A0A6J1IP00 uncharacterized protein LOC1114769475.04e-4676.24Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLL+FPLL  H RPPSTL FPA+KSHLS+ SI+FPTSQFL  PSH    FALMAK PK+D++EQK S+EGS+VESLPNGMFRVRLDN+DLILGYI 
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
A6MMP2 Translation initiation factor IF-1, chloroplastic3.9e-1082.86Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        EQKL HEG ++ESLPNGMFRVRLDN+DLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG

Q3BAK2 Translation initiation factor IF-1, chloroplastic6.6e-1085.71Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        EQKL HEG + ESLPNGMFRVRLDN+DLILGYISG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG

Q7YJU4 Translation initiation factor IF-1, chloroplastic8.6e-1082.86Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        EQKL HEG + ESLPNGMFRVRLDN+DLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG

Q94KR7 Translation initiation factor IF-1, chloroplastic1.3e-1056.25Show/hide
Query:  TSQFLHTPS--HASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        T  FL  P    A+PA +  + +  + + EQK  HEG ++ESLPNGMFRVRLDN+DLILGYISG
Subjt:  TSQFLHTPS--HASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG

Q95GN5 Translation initiation factor IF-1, chloroplastic3.9e-1082.86Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        EQKL HEG ++ESLPNGMFRVRLDN+DLILGY+SG
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.9e-0435.87Show/hide
Query:  LLQSHFRPPSTLLFPAVKSHLSLASISF-PTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG
        LL   FR  + +L P +    S + ++  P  +          A       P+      K   EG V ESLPNGMFRV L+N D ILGYI G
Subjt:  LLQSHFRPPSTLLFPAVKSHLSLASISF-PTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCACAAATCTCCTACAGTTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTCCTTTTTCCCGCCGTCAAATCCCATCTCTCCCTCGCCTCAATCTC
CTTTCCCACCTCCCAATTCCTCCATACCCCTTCTCATGCTTCTCCTGCCTTCGCTCTCATGGCCAAGTCCCCCAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAG
GCTCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATCAAGACCTCATTCTAGGCTACATATCCGGTTGCAGTTTTGAACTATGCAGTATCTTC
TATACAAGCCTGACTTTCCACTCTTTTCAGAGTTTTGGTTTTTCTTGTATATTGGGGTTAGTGAATTACGTTTATATATACTTAAGCTCATCTCATAGAACAATTTTTTT
GACTTCAAGTTGGTTAATGAAGCTTAAGAAACGAACTAGTTTCTATGTGAGTTTCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGCACAAATCTCCTACAGTTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTCCTTTTTCCCGCCGTCAAATCCCATCTCTCCCTCGCCTCAATCTC
CTTTCCCACCTCCCAATTCCTCCATACCCCTTCTCATGCTTCTCCTGCCTTCGCTCTCATGGCCAAGTCCCCCAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAG
GCTCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATCAAGACCTCATTCTAGGCTACATATCCGGTTGCAGTTTTGAACTATGCAGTATCTTC
TATACAAGCCTGACTTTCCACTCTTTTCAGAGTTTTGGTTTTTCTTGTATATTGGGGTTAGTGAATTACGTTTATATATACTTAAGCTCATCTCATAGAACAATTTTTTT
GACTTCAAGTTGGTTAATGAAGCTTAAGAAACGAACTAGTTTCTATGTGAGTTTCTACTAA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGCSFELCSIF
YTSLTFHSFQSFGFSCILGLVNYVYIYLSSSHRTIFLTSSWLMKLKKRTSFYVSFY