; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cucsat.G9211 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9211
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationctg1658:1590288..1593290
RNA-Seq ExpressionCucsat.G9211
SyntenyCucsat.G9211
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744491.1 mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus]1.59e-5697.09Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGN L
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVN
          N
Subjt:  LVN

XP_031744493.1 mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sativus]2.29e-85100Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVNIENELGLIEYSGEDEASTITCVDG
        LVNIENELGLIEYSGEDEASTITCVDG
Subjt:  LVNIENELGLIEYSGEDEASTITCVDG

XP_031744494.1 mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sativus]3.87e-8197.64Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVNIENELGLIEYSGEDEASTITCVDG
        LVNIENEL   EYSGEDEASTITCVDG
Subjt:  LVNIENELGLIEYSGEDEASTITCVDG

XP_031744495.1 mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucumis sativus]1.06e-69100Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVNIENE
        LVNIENE
Subjt:  LVNIENE

XP_031744496.1 mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sativus]4.74e-7099.07Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVNIENEL
        LVNIENE+
Subjt:  LVNIENEL

TrEMBL top hitse value%identityAlignment
A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a6.51e-5190.29Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVN
          N
Subjt:  LVN

A0A2Z6M775 KIX_2 domain-containing protein3.37e-5281.55Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA RFEEKIFTAATSQSDYLRKISLKMLTMETK+Q  M N++
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVN
          N
Subjt:  LVN

A0A392M5V1 Mediator of RNA polymerase II transcription subunit 15A-like (Fragment)1.48e-5276.32Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MDNNNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA RFEEKIFTAATSQSDYLRKISLKMLTMETK+Q  M N++
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVNIENELGLIEYS
          N   + GL+  S
Subjt:  LVNIENELGLIEYS

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a6.51e-5190.29Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVN
          N
Subjt:  LVN

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X13.67e-4986.41Show/hide
Query:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL
        MD NNWRPTQ  EPG+E  DWRSQLQPDSRQRIVNKIMETLKRHLPVSG EGLSEL+KIAVRFEEKI+TAATSQSDYLRKISLKMLTMETK+Q PMG SL
Subjt:  MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSL

Query:  LVN
          N
Subjt:  LVN

SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a6.6e-3467.29Show/hide
Query:  MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS
        MDNNNWRP+    EP M+T DWR+QL PDSRQ+IVNKIMETLK+HLP SG EG++ELR+IA RFEEKIF+ A +Q+DYLRKIS+KMLTMETK+Q   G+S
Subjt:  MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS

Query:  LLVNIEN
          +   N
Subjt:  LLVNIEN

Q9SHV7 Probable mediator of RNA polymerase II transcription subunit 15c2.4e-0430.26Show/hide
Query:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQS
        N NW+P +     +     +DWRSQ +P+ RQ++++KI+E  K       +  +++   IA +FEE  ++ AT ++
Subjt:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQS

Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein4.7e-3567.29Show/hide
Query:  MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS
        MDNNNWRP+    EP M+T DWR+QL PDSRQ+IVNKIMETLK+HLP SG EG++ELR+IA RFEEKIF+ A +Q+DYLRKIS+KMLTMETK+Q   G+S
Subjt:  MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS

Query:  LLVNIEN
          +   N
Subjt:  LLVNIEN

AT1G15790.1 unknown protein5.5e-2059.76Show/hide
Query:  TVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS
        T DWR+Q    SR RIVNKIMET  + LP    EG +ELRKIAVRFEEK+F  A++Q++YLR+I +KML METK+Q   G+S
Subjt:  TVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS

AT1G15790.2 unknown protein5.5e-2059.76Show/hide
Query:  TVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS
        T DWR+Q    SR RIVNKIMET  + LP    EG +ELRKIAVRFEEK+F  A++Q++YLR+I +KML METK+Q   G+S
Subjt:  TVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNS

AT2G10440.1 unknown protein1.7e-0530.26Show/hide
Query:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQS
        N NW+P +     +     +DWRSQ +P+ RQ++++KI+E  K       +  +++   IA +FEE  ++ AT ++
Subjt:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQS

AT2G10440.2 unknown protein1.8e-0728.18Show/hide
Query:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVS------GQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQ
        N NW+P +     +     +DWRSQ +P+ RQ++++KI+ +L  +  V             ++  IA +FEE  ++ AT ++DYLRK+S  +  ++    
Subjt:  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVS------GQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQ

Query:  PPMGNSLLVN
          + + ++VN
Subjt:  PPMGNSLLVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAAT
AATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTC
AGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTCTT
ATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAAT
AATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTC
AGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTCTT
ATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGA
Protein sequenceShow/hide protein sequence
MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGL
IEYSGEDEASTITCVDG