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Cucsat.G9272 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9272
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionclassical arabinogalactan protein 9
Genome locationctg1658:318027..320205
RNA-Seq ExpressionCucsat.G9272
SyntenyCucsat.G9272
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645846.1 hypothetical protein Csa_017309 [Cucumis sativus]4.52e-13299.59Show/hide
Query:  MCLNAIFIKKNVCKLPKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRR-KMMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPP
        MCLNAIFIKKNVCKLPKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRR KMMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPP
Subjt:  MCLNAIFIKKNVCKLPKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRR-KMMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPP

Query:  AATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSV
        AATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSV
Subjt:  AATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSV

Query:  EAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
        EAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Subjt:  EAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML

KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]3.87e-6474.65Show/hide
Query:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTST------PPPVSSPPPA--------------ATPPPASPPPASPPPASPPPATPPPASPPPA
        MDP+AL C TLISIAF +A AQ PSSPPTATP+PPTT+T      PPPVS+PPPA              ATPPPASPPPA+PPPASPPPATPPPASPPPA
Subjt:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTST------PPPVSSPPPA--------------ATPPPASPPPASPPPASPPPATPPPASPPPA

Query:  SPPPASPPPASPPPATPPPASPPP----PATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRK
        +PPPASPPPA+PPPA+PPPA+PPP    PATPPPAPLASPP AVPAPAPSKKK+KAA P P+PVSSPP PS E PGPAGP+ SPTPSQNDNSGVEK WRK
Subjt:  SPPPASPPPASPPPATPPPASPPP----PATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRK

Query:  ESMVGSIVIGMGYVFLM
        E+MVGS++IGMGYV +M
Subjt:  ESMVGSIVIGMGYVFLM

XP_004136948.3 classical arabinogalactan protein 9 [Cucumis sativus]6.31e-97100Show/hide
Query:  MMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPP
        MMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPP
Subjt:  MMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPP

Query:  ASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
        ASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Subjt:  ASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML

XP_008455018.1 PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]7.44e-8289.42Show/hide
Query:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS
        MMDPRA LLCFT ISIAF +A AQSPSSPPTATPSPPTTS      TPPPVSSPPPAATPPPA      SPPPASPPPASPPPATPPPASPPPASPPPAS
Subjt:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS

Query:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
        PPPASPPPA+PPPASPPP A PPPAPLASPPTAVPAPAPSKKKVKAAAP P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
Subjt:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG

Query:  MGYVFLML
        MGYVFLML
Subjt:  MGYVFLML

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]1.98e-6477.4Show/hide
Query:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTST------PPPVSSPPPA---------ATPPPASPPPASPPPASPPPATPPPASPPPASPPPA
        MDP+AL CFTLISIAF +A AQ PSSPPTAT +PPTT+T      PPPVSSPPPA         ATPPPASPPPA+PPPASPPPATPPPASPPPA+PPPA
Subjt:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTST------PPPVSSPPPA---------ATPPPASPPPASPPPASPPPATPPPASPPPASPPPA

Query:  SPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVI
        SPPPA+PPPA+PPPA+PPP ATPPP PLASPP AVPAPAPSKKK+KAA P P+PVSSPP PS E PGPAGP+ SPTPSQNDNSGVEK WRKE+MVGS++I
Subjt:  SPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVI

Query:  GMGYVFLM
        GMGYV +M
Subjt:  GMGYVFLM

TrEMBL top hitse value%identityAlignment
A0A0A0K6D8 Uncharacterized protein1.70e-96100Show/hide
Query:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPA
        MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPA
Subjt:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPA

Query:  SPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
        SPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Subjt:  SPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML

A0A1S3BZW9 classical arabinogalactan protein 93.60e-8289.42Show/hide
Query:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS
        MMDPRA LLCFT ISIAF +A AQSPSSPPTATPSPPTTS      TPPPVSSPPPAATPPPA      SPPPASPPPASPPPATPPPASPPPASPPPAS
Subjt:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS

Query:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
        PPPASPPPA+PPPASPPP A PPPAPLASPPTAVPAPAPSKKKVKAAAP P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
Subjt:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG

Query:  MGYVFLML
        MGYVFLML
Subjt:  MGYVFLML

A0A5A7SJX5 Classical arabinogalactan protein 93.60e-8289.42Show/hide
Query:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS
        MMDPRA LLCFT ISIAF +A AQSPSSPPTATPSPPTTS      TPPPVSSPPPAATPPPA      SPPPASPPPASPPPATPPPASPPPASPPPAS
Subjt:  MMDPRA-LLCFTLISIAFPLARAQSPSSPPTATPSPPTTS------TPPPVSSPPPAATPPPA------SPPPASPPPASPPPATPPPASPPPASPPPAS

Query:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
        PPPASPPPA+PPPASPPP A PPPAPLASPPTAVPAPAPSKKKVKAAAP P+PVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG
Subjt:  PPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIG

Query:  MGYVFLML
        MGYVFLML
Subjt:  MGYVFLML

A0A6J1GK65 classical arabinogalactan protein 9-like2.43e-6376.67Show/hide
Query:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTS-----TPPPVSSPPPA---ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASP
        MDP+AL CFTLI +AF +A AQ PSSPPTA   P TT+     TPPPVS+PPPA   ATPPPASPPPA+PPPASPPPATPPPASPPPASPPPA+PPPASP
Subjt:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTS-----TPPPVSSPPPA---ATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASP

Query:  PPATPPPASPPP---------PATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSI
        PPATPPPASPPP         PATPPPAPLASPP AVPAPAPSKKK+KAA P P+PVSSPP PS E PGPAGP+ SPTPSQNDNSGVEK WRKE+MVGS+
Subjt:  PPATPPPASPPP---------PATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSI

Query:  VIGMGYVFLM
        +IGMGYV +M
Subjt:  VIGMGYVFLM

A0A6J1I8J9 classical arabinogalactan protein 9-like1.65e-4859.09Show/hide
Query:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTT-------------------------------------------------STPPPVSSPPPAAT
        MDP+AL CFTLISIAF +A AQ PSSPPTATP+PP                                                   +TPPP         
Subjt:  MDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTT-------------------------------------------------STPPPVSSPPPAAT

Query:  PPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAP
           ASPPPA+PPPASPPPATPPPASPPPA+PPPASPPPA+PPPATPPPA      TPPPAPLASPP AVPAPAPSKKK+KAA P  +PVSSPP PS E P
Subjt:  PPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAP

Query:  GPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM
        GPAGP+ SPTPSQNDNSGVEK WRKE+++GS++IGMGYV +M
Subjt:  GPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLM

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 93.4e-1855.28Show/hide
Query:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP
        A++C  LI+        Q+P+SPPTATP+PPT +TPPP ++PPP + PPP   SPPP   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+PP
Subjt:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP

Query:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVEKVWRKESMVGSIVIGMGYVFLML
        PA+PPP ATPPPAPLASPP  VPAPAP+    K  +PSPSP SSPP PS +APGP+    SP PS    ND +G  K      MV S+V G   V+ M+
Subjt:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVEKVWRKESMVGSIVIGMGYVFLML

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 92.4e-1955.28Show/hide
Query:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP
        A++C  LI+        Q+P+SPPTATP+PPT +TPPP ++PPP + PPP   SPPP   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+PP
Subjt:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP

Query:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVEKVWRKESMVGSIVIGMGYVFLML
        PA+PPP ATPPPAPLASPP  VPAPAP+    K  +PSPSP SSPP PS +APGP+    SP PS    ND +G  K      MV S+V G   V+ M+
Subjt:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQ---NDNSGVEKVWRKESMVGSIVIGMGYVFLML

AT2G14890.2 arabinogalactan protein 91.0e-1759.52Show/hide
Query:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP
        A++C  LI+        Q+P+SPPTATP+PPT +TPPP ++PPP + PPP   SPPP   +PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+PP
Subjt:  ALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPP--ASPPP--ASPPPASPPP--ATPPPASPPPASPPPASPPPASPPPATPP

Query:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQND
        PA+PPP ATPPPAPLASPP  VPAPAP+    K  +PSPSP SSPP PS +APGP+    SP PS  D
Subjt:  PASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCCACATGTGCCTCAATGCAATTTTTATAAAGAAAAATGTATGTAAATTACCTAAATGCTCTCTATCCTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAA
CGCTCATCATCGCCATCGTCCAACAAGAAGAAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTGTTGTGTTTCACTCTCATTTCCATTGCCTTCCCCCTCGCCCGAG
CTCAGTCTCCCTCCAGTCCTCCCACTGCCACCCCTTCTCCTCCCACCACCTCCACCCCTCCCCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCGGCATCCCCA
CCACCGGCCTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCTTCCCCACCACCCGCATCTCCCCCTCC
GGCAACTCCTCCACCAGCATCTCCTCCTCCTCCCGCGACTCCACCACCTGCACCATTGGCATCACCGCCGACGGCAGTTCCAGCTCCTGCACCAAGTAAGAAGAAGGTGA
AGGCAGCAGCTCCGAGTCCGTCTCCTGTTTCGAGCCCGCCAGCGCCGTCAGTAGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAAT
AGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG
mRNA sequenceShow/hide mRNA sequence
GGCCACATGTGCCTCAATGCAATTTTTATAAAGAAAAATGTATGTAAATTACCTAAATGCTCTCTATCCTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAA
CGCTCATCATCGCCATCGTCCAACAAGAAGAAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTGTTGTGTTTCACTCTCATTTCCATTGCCTTCCCCCTCGCCCGAG
CTCAGTCTCCCTCCAGTCCTCCCACTGCCACCCCTTCTCCTCCCACCACCTCCACCCCTCCCCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCGGCATCCCCA
CCACCGGCCTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCTTCCCCACCACCCGCATCTCCCCCTCC
GGCAACTCCTCCACCAGCATCTCCTCCTCCTCCCGCGACTCCACCACCTGCACCATTGGCATCACCGCCGACGGCAGTTCCAGCTCCTGCACCAAGTAAGAAGAAGGTGA
AGGCAGCAGCTCCGAGTCCGTCTCCTGTTTCGAGCCCGCCAGCGCCGTCAGTAGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAAT
AGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG
Protein sequenceShow/hide protein sequence
GHMCLNAIFIKKNVCKLPKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRRKMMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASP
PPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDN
SGVEKVWRKESMVGSIVIGMGYVFLML