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Cucsat.G932 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G932
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionexosome complex exonuclease RRP44 homolog A
Genome locationctg1:4773699..4776456
RNA-Seq ExpressionCucsat.G932
SyntenyCucsat.G932
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650154.1 hypothetical protein Csa_010466 [Cucumis sativus]2.16e-10399.37Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHL
        MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHL
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHL

Query:  LEILLVHHAQLDVSLVSESLTGIRKLLWQFVRFLCSMGCLLLYTLYAFSYTNKYLNMF
        +EILLVHHAQLDVSLVSESLTGIRKLLWQFVRFLCSMGCLLLYTLYAFSYTNKYLNMF
Subjt:  LEILLVHHAQLDVSLVSESLTGIRKLLWQFVRFLCSMGCLLLYTLYAFSYTNKYLNMF

KAG6571993.1 Exosome complex exonuclease RRP44-like A, partial [Cucurbita argyrosperma subsp. sororia]3.86e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE+DDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

XP_008454914.1 PREDICTED: exosome complex exonuclease RRP44 homolog A [Cucumis melo]1.51e-4897.78Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

XP_022952404.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata]3.86e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE+DDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

XP_022972336.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]3.86e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE+DDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

TrEMBL top hitse value%identityAlignment
A0A0A0K821 Uncharacterized protein1.87e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIAD+EDDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

A0A1S3BZS3 exosome complex exonuclease RRP44 homolog A7.29e-4997.78Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

A0A5A7SKL0 Exosome complex exonuclease RRP44-like protein A7.29e-4997.78Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

A0A6J1GLL6 exosome complex exonuclease RRP44 homolog A-like1.87e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE+DDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

A0A6J1I5P7 exosome complex exonuclease RRP44 homolog A-like1.87e-4896.67Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        MSEI SGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIY RTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE+DDEEEDVHLVPG
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

SwissProt top hitse value%identityAlignment
P37202 Exosome complex exonuclease dis31.1e-0627.91Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHL
        MS + + +  G  H+G + ++ YN  E  V        +++  R N+NRA  GD+V +++L +DQW  E     A+E  D++EDV +         +++ 
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHL

Query:  LEILLVHHAQLDVSLVSESLTGIRKLLWQ
        LE++   +A     +V     GI K  W+
Subjt:  LEILLVHHAQLDVSLVSESLTGIRKLLWQ

Q08162 Exosome complex exonuclease DIS33.5e-0830.34Show/hide
Query:  SEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG
        + +  GL  G+ +QG ++++ YN  E  V        ++I  + N+NRAF+GD V VELL + +W    S+ +  E  D  ++  +  G
Subjt:  SEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPG

Q9CSH3 Exosome complex exonuclease RRP445.9e-0841.11Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYV---GSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE---EDDEEED
        +S++  G+  G Y QG  R +R N  EA V   G +    EI+I    ++NRA   D+VAVELL R QW    S+ + DE   EDD E+D
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYV---GSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE---EDDEEED

Q9SHL7 Exosome complex exonuclease RRP44 homolog A6.7e-3677.53Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP
        MSEI +GLHRGIYHQGKLRVNR+NP+EAYVGSESIG+EIIIY R+NMNRAFDGD+VAVELL RDQW +EK+L+IA+E+D+E++ VHL P
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP

Q9Y2L1 Exosome complex exonuclease RRP441.0e-0738.37Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYV---GSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEE
        +S++  G+  G Y QG  R +R N  EA V   G      EII+    ++NRA   D+VAVELL + QW    S+ + DE  +EE+
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYV---GSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEE

Arabidopsis top hitse value%identityAlignment
AT2G17510.1 ribonuclease II family protein4.8e-3777.53Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP
        MSEI +GLHRGIYHQGKLRVNR+NP+EAYVGSESIG+EIIIY R+NMNRAFDGD+VAVELL RDQW +EK+L+IA+E+D+E++ VHL P
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP

AT2G17510.2 ribonuclease II family protein4.8e-3777.53Show/hide
Query:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP
        MSEI +GLHRGIYHQGKLRVNR+NP+EAYVGSESIG+EIIIY R+NMNRAFDGD+VAVELL RDQW +EK+L+IA+E+D+E++ VHL P
Subjt:  MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAAATTGCTTCTGGTTTGCATCGTGGTATATATCATCAAGGAAAGCTCCGTGTTAATCGATACAACCCATTTGAAGCATATGTTGGAAGTGAGAGTATTGGTGA
TGAAATTATTATTTATAGGCGTACCAACATGAACCGGGCTTTTGATGGTGATGTTGTGGCAGTTGAACTTCTATCTCGAGATCAGTGGCATGAAGAGAAGTCTCTGACTA
TAGCAGACGAAGAAGATGATGAGGAAGAAGATGTTCATCTTGTTCCTGGTAGGCTGATGATGCTCCAACAGCTGCATCTATTGGAGATTCTTCTAGTTCACCACGCCCAG
CTGGACGTGTCATTGGTATCAGAAAGCTTAACTGGCATTCGTAAGCTGTTGTGGCAATTTGTTAGATTCCTCTGTTCCATGGGGTGTCTTTTGCTGTACACATTATATGC
TTTCTCTTATACAAATAAATACTTAAACATGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAAATTGCTTCTGGTTTGCATCGTGGTATATATCATCAAGGAAAGCTCCGTGTTAATCGATACAACCCATTTGAAGCATATGTTGGAAGTGAGAGTATTGGTGA
TGAAATTATTATTTATAGGCGTACCAACATGAACCGGGCTTTTGATGGTGATGTTGTGGCAGTTGAACTTCTATCTCGAGATCAGTGGCATGAAGAGAAGTCTCTGACTA
TAGCAGACGAAGAAGATGATGAGGAAGAAGATGTTCATCTTGTTCCTGGTAGGCTGATGATGCTCCAACAGCTGCATCTATTGGAGATTCTTCTAGTTCACCACGCCCAG
CTGGACGTGTCATTGGTATCAGAAAGCTTAACTGGCATTCGTAAGCTGTTGTGGCAATTTGTTAGATTCCTCTGTTCCATGGGGTGTCTTTTGCTGTACACATTATATGC
TTTCTCTTATACAAATAAATACTTAAACATGTTCTAG
Protein sequenceShow/hide protein sequence
MSEIASGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYRRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADEEDDEEEDVHLVPGRLMMLQQLHLLEILLVHHAQ
LDVSLVSESLTGIRKLLWQFVRFLCSMGCLLLYTLYAFSYTNKYLNMF