CuGenDBv2

Gene ID	Cucsat.G9580
Organism	Cucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Description	nuclear pore complex protein NUP54
Genome location	ctg1673:2938617..2944322
RNA-Seq Expression	Cucsat.G9580
Synteny	Cucsat.G9580
Gene Ontology terms	GO:0006607 - NLS-bearing protein import into nucleus (biological process) GO:0006999 - nuclear pore organization (biological process) GO:0036228 - protein localization to nuclear inner membrane (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0044613 - nuclear pore central transport channel (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR024864 - Nucleoporin Nup54/Nup57/Nup44 IPR025712 - Nucleoporin Nup54, alpha-helical domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012737.1 Nuclear pore complex protein NUP54 [Cucurbita argyrosperma subsp. argyrosperma]

3.49e-250

87.29

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Query:  FGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATG
        FG   S+ AFGTPQS+PAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQQQQQ  QSP+F   +ATG
Subjt:  FGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATG

Query:  FGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFF
        FGFQTPF APQS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYR KP GVSDVSS+  V  +EE S  C+Y FF
Subjt:  FGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFF

Query:  LSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRH
         SDSTLS DNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQR 
Subjt:  LSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRH

Query:  LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLG
        LLR+MR+VEALESKGCRVP+M GEAELAE+LALITRQL+GSGAELSRRV+NLLT+T GQANGSG GNSIY QGS KIHEQSLADMQEVLQQQTEAIARLG
Subjt:  LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLG

Query:  NVLKRDVRDMEIIMAEDKEMADDAS
         VLKRDVRDMEIIMAEDKEM DD S
Subjt:  NVLKRDVRDMEIIMAEDKEMADDAS

XP_004135312.1 nuclear pore complex protein NUP54 [Cucumis sativus]

8.91e-259

91.31

Show/hide

Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
        HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAEDKEMADDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

XP_008446043.1 PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo]

1.50e-250

88.73

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Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQ SSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS +FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPPGVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPV+KGEAELAEKLALITRQLKGSGAELS+RVQNLLT+TRGQANGSGPGNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAEDKEMADDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

XP_022151739.1 nuclear pore complex protein NUP54 [Momordica charantia]

2.73e-230

83.33

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Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQPSSSAFGTPQS         TPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F TGFGSSLFSTPFSSQPSQQ QQ QQSP+F Q  AT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+R KP GVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAM KLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLT TRGQANGS  GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        G VLKRDVRDMEIIMAEDKEM DDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

XP_038893426.1 nuclear pore complex protein NUP54 [Benincasa hispida]

4.77e-247

87.56

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Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQPSSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQ QQQLQQSP+FPQ +AT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KP GVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDS+RLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLT+TRGQANGS  GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAED+EM DDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPW8 Nup54 domain-containing protein

4.31e-259

91.31

Show/hide

Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
        HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAEDKEMADDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

A0A1S3BE47 nuclear pore complex protein NUP54

7.25e-251

88.73

Show/hide

Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQ SSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS +FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPPGVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPV+KGEAELAEKLALITRQLKGSGAELS+RVQNLLT+TRGQANGSGPGNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAEDKEMADDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

A0A5A7SSX4 Nuclear pore complex protein NUP54

7.25e-251

88.73

Show/hide

Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQ SSSAFGTPQS+PAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQS +FPQSSAT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYR KPPGVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPV+KGEAELAEKLALITRQLKGSGAELS+RVQNLLT+TRGQANGSGPGNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        GNVLKRDVRDMEIIMAEDKEMADDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

A0A6J1DDY9 nuclear pore complex protein NUP54

1.32e-230

83.33

Show/hide

Query:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        MFGAQPSSSAFGTPQS         TPAFGTP+STPAFGTPSASPAFGNLSSTPAFGTPSTS+F TGFGSSLFSTPFSSQPSQQ QQ QQSP+F Q  AT
Subjt:  MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF
        GFGFQTPF APQSTPFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKD+AGNPKYAFKHLLFSVTDPQ+R KP GVSD                     
Subjt:  GFGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFF

Query:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR
                        IMWAEAM KLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQRHFLADTLPWVQRL+QKEQGLQR
Subjt:  FLSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQR

Query:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL
         LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLT TRGQANGS  GNSIY QGSAKIHEQSLADMQEVLQQQTEAIARL
Subjt:  HLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARL

Query:  GNVLKRDVRDMEIIMAEDKEMADDAS
        G VLKRDVRDMEIIMAEDKEM DDAS
Subjt:  GNVLKRDVRDMEIIMAEDKEMADDAS

A0A6J1G105 nuclear pore complex protein NUP54

5.24e-227

81.65

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Query:  FGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATG
        FG   S+ AFGTPQS+PAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+SSFATGFGSSLFSTPFSSQPSQQQQQ  QSP+F   +ATG
Subjt:  FGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATG

Query:  FGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFF
        FGFQTPF APQS+PFPNAQLTTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYR KP GVSD                      
Subjt:  FGFQTPFTAPQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFF

Query:  LSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRH
                       IMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQR 
Subjt:  LSDSTLSPDNSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRH

Query:  LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLG
        LLR+MR+VEALESKGCRVP+M GEAELAE+LALITRQL+GSGAELSRRV+NLLT+T GQANGSG GNSIY QGS KIHEQSLADMQEVLQQQTEAIARLG
Subjt:  LLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLG

Query:  NVLKRDVRDMEIIMAEDKEMADDAS
         VLKRDVRDMEIIMAEDKEM DD S
Subjt:  NVLKRDVRDMEIIMAEDKEMADDAS

SwissProt top hits

e value

%identity

Alignment

Q8GYF7 Nuclear pore complex protein NUP54

1.4e-133

64.34

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Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPMFPQSSATGFGFQTPFT----A
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S +F Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPMFPQSSATGFGFQTPFT----A

Query:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFFLSDSTLSPD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KP  VSD                               
Subjt:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFFLSDSTLSPD

Query:  NSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVE
              IMWAEAM+KLEGM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQR +LRVMRI+E
Subjt:  NSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVE

Query:  ALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
         LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELSRRVQ+L T++R QAN    G+S+Y  GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RD
Subjt:  ALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEIIMAEDKEMADDA
        MEI++AED EMA D+
Subjt:  MEIIMAEDKEMADDA

Q9VDV3 Nuclear pore complex protein Nup58

1.3e-09

40.88

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Query:  FGAQPSSS-AFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT
        FGA  +++ AFGT  ++PAFG P +T AFG PA+TPAFG  +A+PAFG  ++TPAFG P+ +S    FG+   +T F +  S Q            + A 
Subjt:  FGAQPSSS-AFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSAT

Query:  GFGFQTPFT-APQSTPFPNAQLTTQMAPVAPLPFSLA
         F F TP T AP + P      TT     A +P SL+
Subjt:  GFGFQTPFT-APQSTPFPNAQLTTQMAPVAPLPFSLA

Arabidopsis top hits

e value

%identity

Alignment

AT1G24310.1 unknown protein

1.0e-134

64.34

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Query:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPMFPQSSATGFGFQTPFT----A
        FGTP S+P+FGTP+STPAFGT  +SPAFG  S+TPAFGTPS  SF++ GFGSSLFS+PFSSQ  QQQQQ QQ    S +F Q  ++ FGFQ+PF      
Subjt:  FGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFAT-GFGSSLFSTPFSSQPSQQQQQLQQ----SPMFPQSSATGFGFQTPFT----A

Query:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFFLSDSTLSPD
         Q TPFPNAQLTTQMAPVAP+P+SLADRD+QAI+EAYK+D  NPKYAF+HLLFSVT+PQYR KP  VSD                               
Subjt:  PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFFLSDSTLSPD

Query:  NSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVE
              IMWAEAM+KLEGM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P ++RL+QKEQ LQR +LRVMRI+E
Subjt:  NSLHCQIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVE

Query:  ALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD
         LE KG R+P+ KGEAEL+EKL  ITRQ+KG GAELSRRVQ+L T++R QAN    G+S+Y  GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD+RD
Subjt:  ALESKGCRVPVMKGEAELAEKLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRD

Query:  MEIIMAEDKEMADDA
        MEI++AED EMA D+
Subjt:  MEIIMAEDKEMADDA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCGGAGCTCAACCGTCCTCCTCCGCCTTCGGCACTCCACAATCAAGTCCGGCCTTTGGCACTCCGCAATCAACTCCGGCATTTGGCACGCCGGCGTCCACTCCTGC
CTTTGGAACTCCATCGGCGTCTCCTGCATTTGGCAATCTTTCCTCAACTCCTGCCTTCGGAACTCCATCTACGTCGTCGTTTGCTACCGGCTTCGGCTCCTCTCTCTTCT
CTACTCCATTCTCTTCTCAGCCTTCACAACAGCAACAGCAGTTGCAGCAATCGCCGATGTTTCCGCAATCATCCGCTACAGGATTCGGTTTCCAGACTCCGTTTACTGCG
CCTCAGTCCACTCCATTTCCAAATGCTCAACTGACCACTCAAATGGCTCCGGTCGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTA
CAAGGACGACGCTGGAAACCCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAGTATAGGACGAAGCCTCCTGGTGTATCGGATGTGAGTTCAATAC
GGCATGTTTTCCCGACTGAAGAATTCTCATCTCTTTGTATGTACTTTTTCTTTTTGTCTGATTCTACACTAAGTCCGGATAATAGTTTGCATTGCCAGATAATGTGGGCT
GAGGCAATGGCAAAGCTCGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCGCAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGA
AGTCATTCTCTCTGATTCCGAGAGACTACGAATGACCCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCCGATACTCTACCTTGGGTTCAAAGATTGAAACAGA
AGGAGCAAGGTCTGCAAAGGCATCTGTTGAGAGTTATGAGAATTGTGGAGGCACTAGAAAGTAAAGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAG
AAGTTAGCCTTGATAACGAGGCAGTTGAAAGGCTCTGGGGCAGAACTTTCAAGGAGGGTACAAAATTTGCTGACAGTTACTCGTGGGCAAGCAAACGGCTCCGGTCCTGG
TAATTCCATCTATTTTCAAGGATCTGCAAAAATACACGAGCAGAGTCTTGCCGATATGCAGGAGGTTTTACAGCAGCAGACTGAGGCCATTGCTAGACTTGGAAATGTTT
TAAAGCGAGATGTTAGAGACATGGAAATCATAATGGCTGAAGATAAAGAGATGGCAGATGATGCAAGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATGFGFQTPFTA
PQSTPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDVSSIRHVFPTEEFSSLCMYFFFLSDSTLSPDNSLHCQIMWA
EAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVEALESKGCRVPVMKGEAELAE
KLALITRQLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMADDAS

Cucsat.G9580 (gene) of Cucumber (B10) v3 genome