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Cucsat.G9614 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9614
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription termination factor MTERF5
Genome locationctg1673:3481543..3482372
RNA-Seq ExpressionCucsat.G9614
SyntenyCucsat.G9614
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034116.1 transcription termination factor MTERF2 [Cucumis melo var. makuwa]1.14e-6582.11Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWK+KINV+KSLGWS+KEI TAFK+ PNYL CSE+K+RDVADFCFNTAKLDPGT+I YPK FK S DKRL+PRYKV+EVLKVKNLLKNKKIA +L+
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        E ER FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

XP_008466910.1 PREDICTED: uncharacterized protein LOC103504258 [Cucumis melo]1.82e-6781.6Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIA--WL
        MSDSTWK+K+ V+KSLGWSEKEI TAFKKDPNYL CSE KMRDVADFCFNTAKLDPGTVI YP FFK+SVDKRL+PRYKV+EVLKVKNLLKNKKIA  W 
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIA--WL

Query:  LLEREREFVEKYIVKHLDEIPNLMD
          + EREFV+  +VKHLDEIPNLMD
Subjt:  LLEREREFVEKYIVKHLDEIPNLMD

XP_016900240.1 PREDICTED: uncharacterized protein LOC107990789 [Cucumis melo]1.26e-6783.74Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        +SDS W  KINVLKSLGWSEKEI  AFKKDPNYL CSE KMRDVADFCFNTAKLDPGTVI YP FFK SVDKRL+PRYKV+EVLKVKNLLKNKKIA +LL
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        + E+ FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

XP_031740907.1 uncharacterized protein LOC101217091 isoform X1 [Cucumis sativus]3.48e-6680.49Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWK+KINV+KSLGWSEKEI TAFKK P YL+CSE+K+RDVADFCFNTAKLDPG+VI YPKFFK SV++RLQPRYKV+E LKVKNLLK+KKIAWLL+
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        E ER F+E Y++K+LDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

XP_031741758.1 transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]3.41e-81100Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        EREREFVEKYIVKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

TrEMBL top hitse value%identityAlignment
A0A1S3BDE1 transcription termination factor MTERF2, chloroplastic-like5.51e-6682.11Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWK+KINV+KSLGWS+KEI TAFK+ PNYL CSE+K+RDVADFCFNTAKLDPGT+I YPK FK S DKRL+PRYKV+EVLKVKNLLKNKKIA +L+
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        E ER FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

A0A1S3CSA2 uncharacterized protein LOC1035042588.81e-6881.6Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIA--WL
        MSDSTWK+K+ V+KSLGWSEKEI TAFKKDPNYL CSE KMRDVADFCFNTAKLDPGTVI YP FFK+SVDKRL+PRYKV+EVLKVKNLLKNKKIA  W 
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIA--WL

Query:  LLEREREFVEKYIVKHLDEIPNLMD
          + EREFV+  +VKHLDEIPNLMD
Subjt:  LLEREREFVEKYIVKHLDEIPNLMD

A0A1S4DWY9 uncharacterized protein LOC1079907896.11e-6883.74Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        +SDS W  KINVLKSLGWSEKEI  AFKKDPNYL CSE KMRDVADFCFNTAKLDPGTVI YP FFK SVDKRL+PRYKV+EVLKVKNLLKNKKIA +LL
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        + E+ FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

A0A5A7SW09 Transcription termination factor MTERF25.51e-6682.11Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWK+KINV+KSLGWS+KEI TAFK+ PNYL CSE+K+RDVADFCFNTAKLDPGT+I YPK FK S DKRL+PRYKV+EVLKVKNLLKNKKIA +L+
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        E ER FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

A0A5D3CXX8 Transcription termination factor MTERF25.51e-6682.11Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL
        MSDSTWK+KINV+KSLGWS+KEI TAFK+ PNYL CSE+K+RDVADFCFNTAKLDPGT+I YPK FK S DKRL+PRYKV+EVLKVKNLLKNKKIA +L+
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLL

Query:  EREREFVEKYIVKHLDEIPNLMD
        E ER FVEKY+VKHLDEIPNLMD
Subjt:  EREREFVEKYIVKHLDEIPNLMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21150.1 Mitochondrial transcription termination factor family protein5.7e-1429.27Show/hide
Query:  SDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAW--LL
        S+S  +RK  + +  GWS+++ + A  + PN ++ S++K+    ++  N   L    ++  P     S++KR++PR +VI +L  K L+K + I +  +L
Subjt:  SDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAW--LL

Query:  LEREREFVEKYIVKHLDEIPNLM
          +  EF++K+++K+ DE+P L+
Subjt:  LEREREFVEKYIVKHLDEIPNLM

AT1G61970.1 Mitochondrial transcription termination factor family protein6.8e-0724.68Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRD-----------------------------------VADFCFNTAKLDPGTVICYPKF
        M++ T + K+++ KSLG+   ++ ++FKK P  L  SE KM D                                     +F           V+  P  
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRD-----------------------------------VADFCFNTAKLDPGTVICYPKF

Query:  FKFSVDKRLQPRYKVIEVLKVKNLLKNK--KIAWLLLEREREFVEKYIVKHLDE
        F +S++KR+ PR  VI+ L  K L++N+   I+ +L+  ++ F+ +Y+  H+D+
Subjt:  FKFSVDKRLQPRYKVIEVLKVKNLLKNK--KIAWLLLEREREFVEKYIVKHLDE

AT1G61990.1 Mitochondrial transcription termination factor family protein2.8e-0827.42Show/hide
Query:  KINVLKS------LGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKN----KKIAWL
        K  +LKS      LG+S  E L   K+ P  +  S + ++   +F     K     ++ +P+ F +S++KR+ PR  ++E L  K LL+       ++ +
Subjt:  KINVLKS------LGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKN----KKIAWL

Query:  LLEREREFVEKYIVKHLDEIPNLM
        L   +  F+++Y++KH + +P LM
Subjt:  LLEREREFVEKYIVKHLDEIPNLM

AT5G07900.1 Mitochondrial transcription termination factor family protein4.4e-1433.88Show/hide
Query:  STWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNK-KIAWLLLER
        S W +   V +  GWSE +I+ AFKK P+ +  SE K+    ++  N   + P ++   P    FS++KR+ PR  V +VL    L+K    +  LL+  
Subjt:  STWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNK-KIAWLLLER

Query:  EREFVEKYIVKHLDEIPNLMD
        E+ F+EK ++K+ +E+P LM+
Subjt:  EREFVEKYIVKHLDEIPNLMD

AT5G64950.1 Mitochondrial transcription termination factor family protein1.8e-1231.71Show/hide
Query:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLL-----KNKKI
        +S+ T+ RK+ +  + G+SE EI    ++ P  + CSEDK+    +F      L+   +   P    ++++KR+ PR KV+++L+ K LL     K K +
Subjt:  MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLL-----KNKKI

Query:  AWLLLEREREFVEKYIVKHLDEI
          ++   E  F+EKY+V+  DEI
Subjt:  AWLLLEREREFVEKYIVKHLDEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATTCAACGTGGAAGAGGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAAGATCCAAACTATTTAAGTTGTTC
GGAGGATAAAATGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGCTGGATCCAGGAACTGTAATTTGTTACCCGAAGTTCTTCAAATTTTCAGTCGACAAGCGAC
TCCAACCGAGGTACAAAGTTATTGAGGTTCTGAAGGTGAAAAATCTTCTTAAGAACAAAAAGATTGCTTGGTTGCTTTTAGAAAGGGAGAGAGAATTTGTGGAGAAATAC
ATAGTTAAGCATTTGGATGAAATTCCAAATCTGATGGAC
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATTCAACGTGGAAGAGGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAAGATCCAAACTATTTAAGTTGTTC
GGAGGATAAAATGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGCTGGATCCAGGAACTGTAATTTGTTACCCGAAGTTCTTCAAATTTTCAGTCGACAAGCGAC
TCCAACCGAGGTACAAAGTTATTGAGGTTCTGAAGGTGAAAAATCTTCTTAAGAACAAAAAGATTGCTTGGTTGCTTTTAGAAAGGGAGAGAGAATTTGTGGAGAAATAC
ATAGTTAAGCATTTGGATGAAATTCCAAATCTGATGGAC
Protein sequenceShow/hide protein sequence
MSDSTWKRKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFKFSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKY
IVKHLDEIPNLMD