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Cucsat.G9617 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9617
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
DescriptionTranscription termination factor MTERF5
Genome locationctg1673:3511646..3515615
RNA-Seq ExpressionCucsat.G9617
SyntenyCucsat.G9617
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034097.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa]1.48e-4876.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VKMVKELG+EPK   FV AL++R S++DS WKKKINV+KSLGWSEKEIFTAFKK+P YL CS EK+RDVADFCFNTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD +LRPR
Subjt:  LDNRLRPR

XP_008445932.1 PREDICTED: uncharacterized protein LOC103488811 [Cucumis melo]9.49e-5076.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VK VKELG+EPK  KFV+A+R+R SL+DS WKKKINV+KSLGWSE EI TAFKKDPNYL+CS EK+RDV DFC NTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD RLRPR
Subjt:  LDNRLRPR

XP_016900229.1 PREDICTED: uncharacterized protein LOC103489536 [Cucumis melo]1.48e-5076.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VKMVKELG+EPK   FV AL++R S++DS WKKKINV+KSLGWSEKEIFTAFKK+P YL CS EK+RDVADFCFNTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD +LRPR
Subjt:  LDNRLRPR

XP_016900240.1 PREDICTED: uncharacterized protein LOC107990789 [Cucumis melo]5.96e-4975.93Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQAVK VKELGVEPK   FVYA+ +R+SL+DS W  KINVLKSLGWSEKEIF AFKKDPNYL CS +KMRDVADFCFNTA LDP TVI YP  F  +
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        +D RLRPR
Subjt:  LDNRLRPR

XP_031741753.1 transcription termination factor MTERF5, chloroplastic [Cucumis sativus]1.43e-6975Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR-RI-------NICKQNMIAASNRVQLKQFV-SCFLSQFIIFVNFTSTQHGTI
        LDNRLRPR R+       N+ K   IA    ++ K+FV +C L       N      G +
Subjt:  LDNRLRPR-RI-------NICKQNMIAASNRVQLKQFV-SCFLSQFIIFVNFTSTQHGTI

TrEMBL top hitse value%identityAlignment
A0A1S3BEP9 uncharacterized protein LOC1034888114.59e-5076.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VK VKELG+EPK  KFV+A+R+R SL+DS WKKKINV+KSLGWSE EI TAFKKDPNYL+CS EK+RDV DFC NTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD RLRPR
Subjt:  LDNRLRPR

A0A1S4DW67 uncharacterized protein LOC1034895367.15e-5176.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VKMVKELG+EPK   FV AL++R S++DS WKKKINV+KSLGWSEKEIFTAFKK+P YL CS EK+RDVADFCFNTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD +LRPR
Subjt:  LDNRLRPR

A0A1S4DWY9 uncharacterized protein LOC1079907892.89e-4975.93Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQAVK VKELGVEPK   FVYA+ +R+SL+DS W  KINVLKSLGWSEKEIF AFKKDPNYL CS +KMRDVADFCFNTA LDP TVI YP  F  +
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        +D RLRPR
Subjt:  LDNRLRPR

A0A5A7SXV5 Transcription termination factor MTERF57.18e-4976.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VKMVKELG+EPK   FV AL++R S++DS WKKKINV+KSLGWSEKEIFTAFKK+P YL CS EK+RDVADFCFNTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD +LRPR
Subjt:  LDNRLRPR

A0A5D3CWR8 Transcription termination factor MTERF54.59e-5076.85Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA
        DRMIQ VK VKELG+EPK  KFV+A+R+R SL+DS WKKKINV+KSLGWSE EI TAFKKDPNYL+CS EK+RDV DFC NTA LDPETVI YP LF+ A
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGA

Query:  LDNRLRPR
        LD RLRPR
Subjt:  LDNRLRPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G61960.1 Mitochondrial transcription termination factor family protein4.9e-0931.58Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPK
        +R  +++K V E+G +P+  KFV ALRV   ++D   ++K+NV K LG+   +++  FKK P++L+ S +K+    +   +   L  E ++   K
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPK

AT1G61970.1 Mitochondrial transcription termination factor family protein2.1e-0735.14Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRD
        ++  + +K V E+G +P   KFV AL+V   +N+   ++K+++ KSLG+   +++++FKK P  L  S +KM D
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRD

AT1G62085.1 Mitochondrial transcription termination factor family protein7.1e-0841.18Show/hide
Query:  QAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM
        +++K V E+G +P   KFV ALRV     D   + K+NV KSLG+S  +++  FKK P++L  S  K+
Subjt:  QAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM

AT1G62490.1 Mitochondrial transcription termination factor family protein1.4e-0840.28Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM
        DR   ++K V E+G +P   KFV AL V   +ND   ++K+NV K LG++ ++++  FKK P  L  S EK+
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM

AT3G46950.1 Mitochondrial transcription termination factor family protein7.1e-0837.5Show/hide
Query:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM
        ++  +++K V ++G +P   KFV AL V   +++   ++K+NV K LG+SE EI+  FKK P +L  S +K+
Subjt:  DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATAGAATGATTCAAGCAGTGAAAATGGTTAAAGAATTAGGCGTTGAACCAAAGGATTGCAAGTTTGTTTATGCACTTAGAGTAAGGGTTTCATTGAATGATTCAGCTTG
GAAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCCGAGAAGGAGATTTTTACAGCATTTAAGAAAGATCCAAATTATTTAGCTTGTTCAGTGGAGAAAATGAGGG
ATGTTGCAGATTTCTGTTTCAACACTGCAAATTTGGATCCAGAAACTGTAATCTTTTACCCTAAGTTATTCATTGGTGCACTGGACAACCGTCTCCGACCAAGAAGGATA
AATATTTGCAAGCAAAACATGATAGCCGCCTCCAACAGGGTTCAACTCAAACAATTTGTTAGCTGCTTTCTCTCCCAATTCATCATTTTTGTGAATTTTACAAGCACCCA
ACATGGCACCATATACACTAAACCCTGGACTATAGGCATGTTTTCTATAAAATCCCAGGCTTCTTTGATCCTGCGAGCTCGACCAGGAAGATCGTCCATAGCGCCCATAG
TGATCCATTGA
mRNA sequenceShow/hide mRNA sequence
GATAGAATGATTCAAGCAGTGAAAATGGTTAAAGAATTAGGCGTTGAACCAAAGGATTGCAAGTTTGTTTATGCACTTAGAGTAAGGGTTTCATTGAATGATTCAGCTTG
GAAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCCGAGAAGGAGATTTTTACAGCATTTAAGAAAGATCCAAATTATTTAGCTTGTTCAGTGGAGAAAATGAGGG
ATGTTGCAGATTTCTGTTTCAACACTGCAAATTTGGATCCAGAAACTGTAATCTTTTACCCTAAGTTATTCATTGGTGCACTGGACAACCGTCTCCGACCAAGAAGGATA
AATATTTGCAAGCAAAACATGATAGCCGCCTCCAACAGGGTTCAACTCAAACAATTTGTTAGCTGCTTTCTCTCCCAATTCATCATTTTTGTGAATTTTACAAGCACCCA
ACATGGCACCATATACACTAAACCCTGGACTATAGGCATGTTTTCTATAAAATCCCAGGCTTCTTTGATCCTGCGAGCTCGACCAGGAAGATCGTCCATAGCGCCCATAG
TGATCCATTGA
Protein sequenceShow/hide protein sequence
DRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDSAWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPKLFIGALDNRLRPRRI
NICKQNMIAASNRVQLKQFVSCFLSQFIIFVNFTSTQHGTIYTKPWTIGMFSIKSQASLILRARPGRSSIAPIVIH