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Cucsat.G9685 (gene) of Cucumber (B10) v3 genome

Gene IDCucsat.G9685
OrganismCucumis sativus L. var. sativus cv. B10 (Cucumber (B10) v3)
Descriptionsurvival of motor neuron-related-splicing factor 30
Genome locationctg1673:5520182..5521688
RNA-Seq ExpressionCucsat.G9685
SyntenyCucsat.G9685
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054176.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo var. makuwa]4.70e-34100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

XP_004142808.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]6.42e-32100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

XP_022155149.1 survival of motor neuron-related-splicing factor 30 [Momordica charantia]4.64e-2890.77Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEVI+LTEELL+TAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

XP_022933076.1 survival of motor neuron-related-splicing factor 30 [Cucurbita moschata]8.43e-2992.31Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

XP_038876515.1 survival of motor neuron-related-splicing factor 30 [Benincasa hispida]1.40e-3096.92Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

TrEMBL top hitse value%identityAlignment
A0A0A0KUI2 Uncharacterized protein1.96e-34100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

A0A5A7UIS4 Survival of motor neuron-related-splicing factor 30 isoform X12.28e-34100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

A0A6J1DPE2 survival of motor neuron-related-splicing factor 302.25e-2890.77Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEVI+LTEELL+TAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

A0A6J1EY48 survival of motor neuron-related-splicing factor 304.08e-2992.31Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

A0A6J1K7R2 survival of motor neuron-related-splicing factor 304.08e-2992.31Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNE+
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

SwissProt top hitse value%identityAlignment
O75940 Survival of motor neuron-related-splicing factor 305.6e-0446Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Q3T045 Survival of motor neuron-related-splicing factor 305.6e-0446Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Q5R591 Survival of motor neuron-related-splicing factor 305.6e-0446Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Q7ZV80 Survival of motor neuron-related-splicing factor 308.7e-0548Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        EEL   LS YK QL QV   L  DP N + + ++K+L+EVI LT++LL++
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Q8BGT7 Survival of motor neuron-related-splicing factor 305.6e-0446Show/hide
Query:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST
        E+LA  L++YK QL QV   L  +  N + + ++K+L+EVI LT++LLST
Subjt:  EELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLST

Arabidopsis top hitse value%identityAlignment
AT2G02570.1 nucleic acid binding;RNA binding1.7e-1973.02Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

AT2G02570.2 nucleic acid binding;RNA binding1.7e-1973.02Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

AT2G02570.3 nucleic acid binding;RNA binding1.7e-1973.02Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV

AT2G02570.4 nucleic acid binding;RNA binding1.7e-1973.02Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EVIALTEE+L+TAKQNE+
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGTTCGTGTGTGTGTTCTTCATCCTCTGATTCTCTTTCTCAAAATTTTTCCAATCTTACGCTCTTTTTCTCCCTTCTCTTCCTCTGCTCATCCAATTCTACCAAAATAAT
GCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACCAGCTTCACCAGGTCAGACAACTGTTAGATGATGATCCCGGAAACTCTG
AATACATTGATATGGAAAAGGAGCTTGAAGAGGTTATTGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGGTT
mRNA sequenceShow/hide mRNA sequence
CGTTCGTGTGTGTGTTCTTCATCCTCTGATTCTCTTTCTCAAAATTTTTCCAATCTTACGCTCTTTTTCTCCCTTCTCTTCCTCTGCTCATCCAATTCTACCAAAATAAT
GCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACCAGCTTCACCAGGTCAGACAACTGTTAGATGATGATCCCGGAAACTCTG
AATACATTGATATGGAAAAGGAGCTTGAAGAGGTTATTGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGGTT
Protein sequenceShow/hide protein sequence
RSCVCSSSSDSLSQNFSNLTLFFSLLFLCSSNSTKIMQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVIALTEELLSTAKQNEV