; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10000178 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000178
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpolyubiquitin-like
Genome locationChr09:1816420..1816674
RNA-Seq ExpressionHG10000178
SyntenyHG10000178
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6223754.1 unnamed protein product [Miscanthus lutarioriparius]3.2e-1062.3Show/hide
Query:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        MQIFVKTL GK + L+  +S TIA VK KIQ KEG P +QQRL+F G +LDDDRTLA   +
Subjt:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
RWR80812.1 ubiquitin-60S ribosomal protein L40-like protein [Cinnamomum micranthum f. kanehirae]4.2e-1056.52Show/hide
Query:  RKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        R+ R Q EMQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  RKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
XP_002460728.1 ubiquitin [Sorghum bicolor]3.2e-1062.3Show/hide
Query:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        MQIFVKTL GK + L+  +S TIA VK KIQ KEG P +QQRL+F G +LDDDRTLA   +
Subjt:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
XP_008463442.1 PREDICTED: polyubiquitin-like [Cucumis melo]9.6e-3177.38Show/hide
Query:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
        MD KL+R WL++KLRPQPEMQIFVKTL+G+KM+LD LT+ TI +VK KI+AKEGYP +QQRLVFNGWKLDDDRTL SCG+WSGS
Subjt:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
XP_022154970.1 ubiquitin-like isoform X1 [Momordica charantia]5.9e-1250Show/hide
Query:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
        +D KL++ WL+R L    +MQI VK L GK +  + L S TI  VK KI+A EGYP +QQRL++ G +L+D RTLA   + SGS
Subjt:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
TrEMBL top hitse value%identityAlignment
A0A0A9NQH8 Ubiquitin2.0e-1062.3Show/hide
Query:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        MQIFVKTL GK + L+  +S TIA VK KIQ +EG P EQQRL+F G +LDDDRTLA   +
Subjt:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
A0A1S3CKU5 polyubiquitin-like4.7e-3177.38Show/hide
Query:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
        MD KL+R WL++KLRPQPEMQIFVKTL+G+KM+LD LT+ TI +VK KI+AKEGYP +QQRLVFNGWKLDDDRTL SCG+WSGS
Subjt:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
A0A5D3BMH5 Polyubiquitin-like4.7e-3177.38Show/hide
Query:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
        MD KL+R WL++KLRPQPEMQIFVKTL+G+KM+LD LT+ TI +VK KI+AKEGYP +QQRLVFNGWKLDDDRTL SCG+WSGS
Subjt:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
A0A6J1DL46 ubiquitin-like isoform X12.8e-1250Show/hide
Query:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
        +D KL++ WL+R L    +MQI VK L GK +  + L S TI  VK KI+A EGYP +QQRL++ G +L+D RTLA   + SGS
Subjt:  MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS
C5X993 Ubiquitin1.6e-1062.3Show/hide
Query:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        MQIFVKTL GK + L+  +S TIA VK KIQ KEG P +QQRL+F G +LDDDRTLA   +
Subjt:  MQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
SwissProt top hitse value%identityAlignment
P0CG82 Polyubiquitin1.8e-1155.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + LD   S TI  VK KIQ KEG P +QQRL+F G +L+D RTL+   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
P0CG85 Polyubiquitin2.3e-1155.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
P0CH04 Polyubiquitin2.3e-1155.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
P23324 Polyubiquitin1.4e-1156.72Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + LD   S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
Q9FHQ6 Polyubiquitin 91.0e-1150Show/hide
Query:  DVKLQRTWLMR-KLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        D  +Q+  ++   LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +LDD RTLA   +
Subjt:  DVKLQRTWLMR-KLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
Arabidopsis top hitse value%identityAlignment
AT4G02890.1 Ubiquitin family protein1.6e-1255.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
AT4G05050.1 ubiquitin 111.6e-1255.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
AT4G05320.2 polyubiquitin 101.6e-1255.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
AT4G05320.3 polyubiquitin 101.6e-1255.22Show/hide
Query:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +L+D RTLA   +
Subjt:  LRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
AT5G37640.1 ubiquitin 97.4e-1350Show/hide
Query:  DVKLQRTWLMR-KLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV
        D  +Q+  ++   LR +  MQIFVKTL GK + L+  +S TI  VK KIQ KEG P +QQRL+F G +LDD RTLA   +
Subjt:  DVKLQRTWLMR-KLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCAAATTGCAAAGGACGTGGTTGATGAGGAAACTCCGTCCCCAGCCTGAGATGCAAATCTTCGTGAAAACTCTGGACGGCAAAAAGATGAACTTAGATGCTTT
AACGTCAGTTACAATTGCTGAAGTGAAGGTCAAAATTCAAGCAAAAGAAGGGTATCCTCATGAACAACAACGTCTGGTTTTTAATGGTTGGAAGCTTGATGATGATAGAA
CCTTAGCTAGCTGTGGCGTTTGGAGTGGATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTCAAATTGCAAAGGACGTGGTTGATGAGGAAACTCCGTCCCCAGCCTGAGATGCAAATCTTCGTGAAAACTCTGGACGGCAAAAAGATGAACTTAGATGCTTT
AACGTCAGTTACAATTGCTGAAGTGAAGGTCAAAATTCAAGCAAAAGAAGGGTATCCTCATGAACAACAACGTCTGGTTTTTAATGGTTGGAAGCTTGATGATGATAGAA
CCTTAGCTAGCTGTGGCGTTTGGAGTGGATCTTAA
Protein sequenceShow/hide protein sequence
MDVKLQRTWLMRKLRPQPEMQIFVKTLDGKKMNLDALTSVTIAEVKVKIQAKEGYPHEQQRLVFNGWKLDDDRTLASCGVWSGS