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HG10000182 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000182
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr09:1824007..1824736
RNA-Seq ExpressionHG10000182
SyntenyHG10000182
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057401.1 hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa]2.9e-0732.2Show/hide
Query:  NFNMGVSCFSINESQQTKIKDVGPPNNGMVVCSNPLSSGR---TSNESPHLSSQSHCLKVNEESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNS
        NFN  +  F I    Q K   +  P    V   +  SS      SN+ P  +S  H LK +++   S+        K++  L K F K F+RK+TSF NS
Subjt:  NFNMGVSCFSINESQQTKIKDVGPPNNGMVVCSNPLSSGR---TSNESPHLSSQSHCLKVNEESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNS

Query:  WSSIVNSDLLEECCVKIQVLGIIPEGVLSNSLSSHSPNHR-------------------DSDGESIAIASSDKLDGYEAEVILEEEGETVDSFGKDICQI
        W+ I N DLLEE CVK+QV GI+    + +S S +  NH                    DS+ ES+   SS+ L+  E + I   E E  +   K +  +
Subjt:  WSSIVNSDLLEECCVKIQVLGIIPEGVLSNSLSSHSPNHR-------------------DSDGESIAIASSDKLDGYEAEVILEEEGETVDSFGKDICQI

Query:  FQEEE
        FQ E+
Subjt:  FQEEE

XP_038876692.1 uncharacterized protein LOC120069082 isoform X2 [Benincasa hispida]3.0e-0450Show/hide
Query:  KHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQV
        + +HLLK FPK+F R+K+S + +WS + NS+LLE+CC ++Q+
Subjt:  KHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQV

XP_038886519.1 uncharacterized protein LOC120076693 isoform X2 [Benincasa hispida]3.0e-0446.55Show/hide
Query:  FDSRTSPPSSSKKKHT---HLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQV
        F+   SP      K T   HL + + KHF RKKTSF N W++++N+DLLE+CC+K+Q+
Subjt:  FDSRTSPPSSSKKKHT---HLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQV

XP_038887514.1 RNA-binding protein 39-like isoform X1 [Benincasa hispida]3.7e-1059.68Show/hide
Query:  ESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQVLGIIP
        E  D R S   S  KKH+ LLK FP+HF RKKTSF NSW+++ NSDLLEECCVK+Q+    P
Subjt:  ESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQVLGIIP

TrEMBL top hitse value%identityAlignment
A0A0A0KHK4 Uncharacterized protein2.7e-0660Show/hide
Query:  SSSKKKHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQVLGI
        S   ++ ++L KSF KHFARKKTSF NSW+ I N D+LE  CVKIQV G+
Subjt:  SSSKKKHTHLLKSFPKHFARKKTSFLNSWSSIVNSDLLEECCVKIQVLGI

A0A5A7UV76 Uncharacterized protein1.4e-0732.2Show/hide
Query:  NFNMGVSCFSINESQQTKIKDVGPPNNGMVVCSNPLSSGR---TSNESPHLSSQSHCLKVNEESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNS
        NFN  +  F I    Q K   +  P    V   +  SS      SN+ P  +S  H LK +++   S+        K++  L K F K F+RK+TSF NS
Subjt:  NFNMGVSCFSINESQQTKIKDVGPPNNGMVVCSNPLSSGR---TSNESPHLSSQSHCLKVNEESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNS

Query:  WSSIVNSDLLEECCVKIQVLGIIPEGVLSNSLSSHSPNHR-------------------DSDGESIAIASSDKLDGYEAEVILEEEGETVDSFGKDICQI
        W+ I N DLLEE CVK+QV GI+    + +S S +  NH                    DS+ ES+   SS+ L+  E + I   E E  +   K +  +
Subjt:  WSSIVNSDLLEECCVKIQVLGIIPEGVLSNSLSSHSPNHR-------------------DSDGESIAIASSDKLDGYEAEVILEEEGETVDSFGKDICQI

Query:  FQEEE
        FQ E+
Subjt:  FQEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTACTACAACATTTCCCGCCAACAAAAATTTTAATATGGGTGTGTCCTGCTTTTCAATCAACGAATCTCAACAGACAAAAATTAAAGATGTTGGTCCCCCCAA
TAATGGCATGGTAGTCTGTAGTAATCCACTTTCTTCAGGAAGGACAAGCAACGAAAGCCCACATCTGTCTTCACAATCTCATTGTCTAAAGGTAAACGAAGAGTCTTTTG
ATTCCCGTACTTCTCCTCCTTCATCCTCCAAGAAGAAACACACACATTTACTGAAGTCGTTTCCCAAACACTTTGCCAGAAAAAAGACCTCCTTCCTCAATTCTTGGTCT
TCCATAGTGAACTCGGATTTGTTGGAGGAATGTTGTGTCAAAATTCAAGTCCTTGGTATCATACCTGAAGGTGTTCTGAGCAACTCTCTCAGCAGCCATAGTCCAAATCA
TCGGGATTCTGATGGTGAATCAATAGCAATTGCCAGCAGTGATAAATTAGATGGCTATGAAGCAGAGGTGATTCTTGAAGAAGAAGGAGAGACAGTTGACAGTTTCGGTA
AAGACATTTGCCAAATATTCCAAGAAGAGGAAACTCAGAAGTTTGGTGAGGCTGATGATACTCTATTTCCTCCTCTTAACAAGAAGGAGATTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTACTACAACATTTCCCGCCAACAAAAATTTTAATATGGGTGTGTCCTGCTTTTCAATCAACGAATCTCAACAGACAAAAATTAAAGATGTTGGTCCCCCCAA
TAATGGCATGGTAGTCTGTAGTAATCCACTTTCTTCAGGAAGGACAAGCAACGAAAGCCCACATCTGTCTTCACAATCTCATTGTCTAAAGGTAAACGAAGAGTCTTTTG
ATTCCCGTACTTCTCCTCCTTCATCCTCCAAGAAGAAACACACACATTTACTGAAGTCGTTTCCCAAACACTTTGCCAGAAAAAAGACCTCCTTCCTCAATTCTTGGTCT
TCCATAGTGAACTCGGATTTGTTGGAGGAATGTTGTGTCAAAATTCAAGTCCTTGGTATCATACCTGAAGGTGTTCTGAGCAACTCTCTCAGCAGCCATAGTCCAAATCA
TCGGGATTCTGATGGTGAATCAATAGCAATTGCCAGCAGTGATAAATTAGATGGCTATGAAGCAGAGGTGATTCTTGAAGAAGAAGGAGAGACAGTTGACAGTTTCGGTA
AAGACATTTGCCAAATATTCCAAGAAGAGGAAACTCAGAAGTTTGGTGAGGCTGATGATACTCTATTTCCTCCTCTTAACAAGAAGGAGATTCCATAG
Protein sequenceShow/hide protein sequence
MASTTTFPANKNFNMGVSCFSINESQQTKIKDVGPPNNGMVVCSNPLSSGRTSNESPHLSSQSHCLKVNEESFDSRTSPPSSSKKKHTHLLKSFPKHFARKKTSFLNSWS
SIVNSDLLEECCVKIQVLGIIPEGVLSNSLSSHSPNHRDSDGESIAIASSDKLDGYEAEVILEEEGETVDSFGKDICQIFQEEETQKFGEADDTLFPPLNKKEIP