; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10000200 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000200
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationChr09:2061266..2072112
RNA-Seq ExpressionHG10000200
SyntenyHG10000200
Gene Ontology termsGO:0043229 - intracellular organelle (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604859.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2774.23Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL

KAG7034971.1 High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2774.23Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL

XP_022947100.1 high mobility group B protein 3-like [Cucurbita moschata]1.8e-2774.23Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL

XP_022971125.1 high mobility group B protein 3-like [Cucurbita maxima]1.1e-2773.27Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNLFNS
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L  S
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNLFNS

Query:  V
        V
Subjt:  V

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]1.1e-2980.41Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKKNL
        MLKQRKTEMKSTK  KATKKDQNAPKRPATAFFVFMEEFRKTFKE FPDAKAGPV               EKAPYAEKAL RKAEYEIALEAYKKNL
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKKNL

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X11.1e-2266.06Show/hide
Query:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV-----------------------EKAPYAEKALGRKAEYEIALEAY
        LKQRK EMKST   K+ KKDQNAPKRPATAFFVFMEEFR  FKE FPDAKAGPV                       EKAPYAEKAL RKAEYEIALEAY
Subjt:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV-----------------------EKAPYAEKALGRKAEYEIALEAY

Query:  KKNLFNSVT
        K N FN  T
Subjt:  KKNLFNSVT

A0A1S3C2L9 high mobility group B protein 1-like isoform X21.3e-2371.29Show/hide
Query:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKKNLFNSV
        LKQRK EMKST   K+ KKDQNAPKRPATAFFVFMEEFR  FKE FPDAKAGPV               EKAPYAEKAL RKAEYEIALEAYK N FN  
Subjt:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKKNLFNSV

Query:  T
        T
Subjt:  T

A0A6J1CIL2 high mobility group B protein 3-like9.7e-2773.2Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL
        MLKQRK EMKSTK NK+ KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEKAL RK EY IALEAYKK L
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL

A0A6J1G5W3 high mobility group B protein 3-like8.7e-2874.23Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNL

A0A6J1I4V5 high mobility group B protein 3-like5.1e-2873.27Show/hide
Query:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNLFNS
        MLK+RK EMKSTK NKA KKDQNAPKRPATAFF+FMEEFRKTFKE FPDAKAGP                EKAPYAEK+LGRKAEYEIALE YKK L  S
Subjt:  MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGP---------------VEKAPYAEKALGRKAEYEIALEAYKKNLFNS

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 12.9e-1246.74Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K   + T+  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ KA                  EKAPY EKA  RKAEYE  ++AY KNL
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

O49596 High mobility group B protein 23.6e-1044.79Show/hide
Query:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        L   K   K     KA  KD N PKRPA+AFFVFME+FR+TFK+  P  K+                  EKAPY  KA  RK EYE  ++AY K L
Subjt:  LKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

P26585 HMG1/2-like protein1.0e-0940.59Show/hide
Query:  KQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNLFNSVT
        K   T+ +   G     KD N PKRP +AFFVFMEEFRK F +  P+ KA                  EKAPY  K+  RK EYE  + AY K      T
Subjt:  KQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNLFNSVT

Query:  G
        G
Subjt:  G

P40619 HMG1/2-like protein7.2e-1146.67Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKK
        K +   TK  K   KD N PKRP +AFFVFME+FRKT+KE  P+ K+  V               EKAP+  KA  RK EYE  L+AY K
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPV---------------EKAPYAEKALGRKAEYEIALEAYKK

P93047 High mobility group B protein 35.5e-1146.59Show/hide
Query:  KSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K  KG K   KD N PKRP++AFFVFME+FR T+KE  P  K+                  EKAPY  KA  RK EYE  ++AY K L
Subjt:  KSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B33.9e-1246.59Show/hide
Query:  KSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K  KG K   KD N PKRP++AFFVFME+FR T+KE  P  K+                  EKAPY  KA  RK EYE  ++AY K L
Subjt:  KSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

AT3G51880.1 high mobility group B12.1e-1346.74Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K   + T+  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ KA                  EKAPY EKA  RKAEYE  ++AY KNL
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

AT3G51880.2 high mobility group B12.1e-1346.74Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K   + T+  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ KA                  EKAPY EKA  RKAEYE  ++AY KNL
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

AT3G51880.3 high mobility group B12.1e-1346.74Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K   + T+  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ KA                  EKAPY EKA  RKAEYE  ++AY KNL
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL

AT3G51880.4 high mobility group B12.1e-1346.74Show/hide
Query:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL
        K   + T+  K  KKD N PKR  +AFFVF+E+FR TFK+  P+ KA                  EKAPY EKA  RKAEYE  ++AY KNL
Subjt:  KTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKA---------------GPVEKAPYAEKALGRKAEYEIALEAYKKNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGCAGAGAAAAACTGAGATGAAATCCACGAAAGGCAATAAAGCCACGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACAGCCTTCTTCGTTTTCATGGA
GGAATTTAGAAAGACGTTCAAGGAGAACTTTCCTGATGCAAAAGCTGGTCCAGTGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGGGAAGGAAGGCAGAGTATGAGATAG
CTCTTGAAGCATACAAGAAAAATCTCTTTAATTCAGTGACTGGAGTGTGGTTCGATGGCTCTCGAGGAAAAAAACTCTGCGGTTCAGTGATTCTTAGATTTGACAAGCAA
ATCAGTAAGGGGAGAGAAATTTTGAGTTTGTTTGCTGTGAACTTGCAGTTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGT
TGTAAGCGTCGATCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGCAGAGAAAAACTGAGATGAAATCCACGAAAGGCAATAAAGCCACGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACAGCCTTCTTCGTTTTCATGGA
GGAATTTAGAAAGACGTTCAAGGAGAACTTTCCTGATGCAAAAGCTGGTCCAGTGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGGGAAGGAAGGCAGAGTATGAGATAG
CTCTTGAAGCATACAAGAAAAATCTCTTTAATTCAGTGACTGGAGTGTGGTTCGATGGCTCTCGAGGAAAAAAACTCTGCGGTTCAGTGATTCTTAGATTTGACAAGCAA
ATCAGTAAGGGGAGAGAAATTTTGAGTTTGTTTGCTGTGAACTTGCAGTTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGT
TGTAAGCGTCGATCGATAA
Protein sequenceShow/hide protein sequence
MLKQRKTEMKSTKGNKATKKDQNAPKRPATAFFVFMEEFRKTFKENFPDAKAGPVEKAPYAEKALGRKAEYEIALEAYKKNLFNSVTGVWFDGSRGKKLCGSVILRFDKQ
ISKGREILSLFAVNLQLLSLFCNSSGLVDIVGELLGVVSVDR