CuGenDBv2

Gene ID	HG10000366
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NERD domain-containing protein
Genome location	Chr09:4281201..4285669
RNA-Seq Expression	HG10000366
Synteny	HG10000366
Gene Ontology terms	NA
InterPro domains	IPR011528 - Nuclease-related domain, NERD

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148081.1 uncharacterized protein LOC101217532 [Cucumis sativus]

1.1e-111

88.03

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI+ GLIVYGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGG AYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLP+P                    VEETKQLIP+LESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKE QEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

XP_008459170.1 PREDICTED: uncharacterized protein LOC103498367 [Cucumis melo]

5.7e-113

88.89

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI+ GL+VYGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVD+PAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

XP_022943551.1 uncharacterized protein LOC111448288 [Cucurbita moschata]

2.5e-108

85.47

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MW AII GLIVY LFKLFF+GDDDVMEVETSDFNAIF+VA+RFEKLYGGKAY+GLRIPDADTGSR+NIDLVVVTKEELL+ISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVDLP GYLSCKVVLPNPKFRTIDSGLFP EV TYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQ+EPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

XP_023513340.1 uncharacterized protein LOC111777849 [Cucurbita pepo subsp. pepo]

2.5e-108

85.47

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MW AII GLIVY LFKLFF+GDDDVMEVETSDFNAIF+VA+RFEKLYGGKAY+GLRIPDADTGSR+NIDLVVVTKEELL+ISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVDLP GYLSCKVVLPNPKFRTIDSGLFP EV TYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQ+EPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

XP_038901981.1 uncharacterized protein LOC120088636 [Benincasa hispida]

4.8e-112

87.61

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI  GLI+YGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVV+TKEELLVI+VKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPV+ESY+EQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTU6 NERD domain-containing protein

5.2e-112

88.03

Show/hide

Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI+ GLIVYGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGG AYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLP+P                    VEETKQLIP+LESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKE QEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

A0A1S3CA35 uncharacterized protein LOC103498367

2.7e-113

88.89

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI+ GL+VYGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVD+PAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

A0A5A7SRC0 Plasma membrane isoform 1

2.7e-113

88.89

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MWFAI+ GL+VYGLFKLFFAGDDDVMEVETSDFNAIF+VASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVD+PAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

A0A6J1FS11 uncharacterized protein LOC111448288

1.2e-108

85.47

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MW AII GLIVY LFKLFF+GDDDVMEVETSDFNAIF+VA+RFEKLYGGKAY+GLRIPDADTGSR+NIDLVVVTKEELL+ISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDGKHKAKTLPDP                    VEETKQLIPVLESYLEQRGVDLP GYLSCKVVLPNPKFRTIDSGLFP EV TYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQ+EPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

A0A6J1J7Y0 uncharacterized protein LOC111484272

3.5e-108

84.62

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Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MW AI+ GLIVY LFKLFF+GDDDVMEVETSDFNAIF+VA+RFEKLYGGKAY+GLRIPDADTGSR+NIDLVVVTKEELL+ISVKNLSGFVSINSDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS
        DDG+HKAKTLPDP                    VEETKQLIPVLESYLEQRGVDLP GYLSCKVVLPNPKFRTIDSGLFP EV TYDQWMQLKP HSSFS
Subjt:  DDGKHKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFS

Query:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
        GWMKGAFRGKKELQ+EPLDQKLKAILGTAPMWDK
Subjt:  GWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

1.7e-67

58.47

Show/hide

Query:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC
        MW  II GL++Y L + FF  DD+  +VETSD  A+FSVA R EKLYGGKAYVGLRIPDADT SRQ+ID+V+VTK +++VISVKNLSG V++ SDGSWVC
Subjt:  MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVC

Query:  DDGK-HKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP-EHSS
        + GK H  +T PDP                    + E K+   VLESYLEQRGV L  G +SCKVV+PNP FRTI +  FPSEVITY+ W QLKP   S 
Subjt:  DDGK-HKAKTLPDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKP-EHSS

Query:  FSGWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK
         SGW+KGAF   KE+QE    QKL  ILGTAP WD+
Subjt:  FSGWMKGAFRGKKELQEEPLDQKLKAILGTAPMWDK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGTTCGCAATTATCAGTGGACTGATCGTCTACGGCCTGTTCAAGCTTTTCTTTGCCGGCGACGACGATGTTATGGAGGTTGAGACCTCCGATTTTAATGCTATTTT
CTCCGTCGCGAGTAGGTTCGAAAAGCTTTATGGTGGAAAGGCTTACGTTGGGCTTCGGATTCCTGATGCTGACACCGGTTCTCGGCAGAATATTGATCTCGTAGTGGTCA
CCAAAGAGGAGTTATTGGTGATATCTGTTAAGAACTTATCTGGATTTGTCTCCATCAATTCGGATGGTTCCTGGGTTTGTGATGATGGAAAACATAAGGCAAAGACTCTT
CCTGATCCTTCGCCAACTAATCATGTTGTACATACGGGAAAGCATGGCACTGCTGTTGCGCTGATAGAGGTTGAAGAGACCAAACAATTGATACCAGTCCTTGAGTCTTA
CCTTGAACAAAGAGGAGTGGATCTTCCAGCAGGGTATCTGTCATGCAAAGTTGTACTTCCAAATCCCAAATTCCGTACAATTGACTCGGGGTTATTTCCTTCTGAAGTTA
TTACCTATGACCAGTGGATGCAGCTGAAACCGGAACACAGTTCCTTCTCTGGCTGGATGAAAGGTGCATTTCGTGGAAAGAAAGAGTTGCAGGAAGAACCTCTGGATCAA
AAGCTTAAAGCTATCCTAGGCACTGCGCCAATGTGGGATAAGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MWFAIISGLIVYGLFKLFFAGDDDVMEVETSDFNAIFSVASRFEKLYGGKAYVGLRIPDADTGSRQNIDLVVVTKEELLVISVKNLSGFVSINSDGSWVCDDGKHKAKTL
PDPSPTNHVVHTGKHGTAVALIEVEETKQLIPVLESYLEQRGVDLPAGYLSCKVVLPNPKFRTIDSGLFPSEVITYDQWMQLKPEHSSFSGWMKGAFRGKKELQEEPLDQ
KLKAILGTAPMWDK

HG10000366 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome