CuGenDBv2

Gene ID	HG10000558
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nucleoporin NUP188-like protein
Genome location	Chr09:6404920..6416487
RNA-Seq Expression	HG10000558
Synteny	HG10000558
Gene Ontology terms	GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR044840 - Nucleoporin Nup188

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0045699.1 nucleoporin NUP188-like protein [Cucumis melo var. makuwa]

2.9e-57

67.35

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DICD A RLI DGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCNAD+W+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

XP_008457947.1 PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo]

2.9e-57

67.35

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DICD A RLI DGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCNAD+W+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

XP_011649284.1 uncharacterized protein LOC101204633 [Cucumis sativus]

1.1e-56

64.25

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Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DI D A RL+TDGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSC
        FTFWAEETLTEDNLILDILFIAYYESF+RCNADRW+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR  + 
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSC

Query:  LLKLIYF
        +  L  F
Subjt:  LLKLIYF

XP_022947489.1 uncharacterized protein LOC111451342 [Cucurbita moschata]

2.4e-56

64.8

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Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        ++VGNGSKK DICDKA  L+TDGLE+KLI VL+SLMSS+H EQ                                                    MD+DL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCN +RWRALCLLYKGIISGSYN+EML+ISSAAIHS+CQVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

XP_038902764.1 uncharacterized protein LOC120089385 isoform X1 [Benincasa hispida]

5.8e-58

68.39

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +F+GNGSKK D CDKA RLITDGLENKLISVLQSLMSSSH EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQT
        FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWR LCLLYKGIISGSYNMEMLAISS+AIHS+CQVKVRLLFILMETLDLESLLQMVHDQT
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPK9 Uncharacterized protein

5.3e-57

64.25

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DI D A RL+TDGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSC
        FTFWAEETLTEDNLILDILFIAYYESF+RCNADRW+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR  + 
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSC

Query:  LLKLIYF
        +  L  F
Subjt:  LLKLIYF

A0A1S3C7B7 uncharacterized protein LOC103497512

1.4e-57

67.35

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DICD A RLI DGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCNAD+W+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

A0A5A7TWR3 Nucleoporin NUP188-like protein

1.4e-57

67.35

Show/hide

Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        +FVGNGSKK DICD A RLI DGLENKLISVLQSL+SSSH+EQ                                                    MDVDL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCNAD+W+ALCLLYKGIISGSYNME+LAISSAAIHS+ QVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

A0A6J1G6Y8 uncharacterized protein LOC111451342

1.2e-56

64.8

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Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        ++VGNGSKK DICDKA  L+TDGLE+KLI VL+SLMSS+H EQ                                                    MD+DL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCN +RWRALCLLYKGIISGSYN+EML+ISSAAIHS+CQVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

A0A6J1I6R8 uncharacterized protein LOC111469682

1.2e-56

64.8

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Query:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL
        ++VGNGSKK DICDKA  L+TDGLE+KLI VL+SLMSS+H EQ                                                    MD+DL
Subjt:  VFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDL

Query:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR
        FTFWAEETLTEDNLILDILFIAYYESFVRCN +RWRALCLLYKGIISGSYN+EML+ISSAAIHS+CQVKVRLLFILMETLDLESLLQMVHDQTTFR
Subjt:  FTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G10845.1 unknown protein

3.4e-08

36.69

Show/hide

Query:  VKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDLFTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYN
        +K RR+R W  L       K    +RR  R    A  D S+  L+DV+LFTFW EETL ED  +          SF  CN +RWR L   YK        
Subjt:  VKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDLFTFWAEETLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYN

Query:  MEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVH
                            LL IL ET D+E+LLQMVH
Subjt:  MEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVH

AT4G38760.1 Protein of unknown function (DUF3414)

1.2e-34

41.92

Show/hide

Query:  KKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDLFTFWAEE
        ++  I ++A +LI+DGLE +  SVL+ L+SS   +                                                     MDV+LFT WAEE
Subjt:  KKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDLFTFWAEE

Query:  TLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSCLLKLI
        TL EDNLILDILF+ Y ES+  CN +RWR LC  YKGI+SGSYN   LA+S  A HSAC+V+++LL IL+ETLD+E+LLQMVHD   FR  +C+  ++
Subjt:  TLTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSCLLKLI

Sequences

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CDS sequence

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ATGAGGAGAATAGGGCGAAGGCGACATAGGGGAAAGATGGAGAAGGAAAGGTTAGAGCGAAGGAAGAAGAAAGAAGAGAAAAAAGAAGAAGAAAGAAAAAAGGGGGACCT
GGACGAAGAAGACAGGCGGAAACGGAGAAGAGTTAACCCGCCTACGTTGATTGGAAGATTGGACGGTCAGAAATTGACAACGGAGGACGAAGGATGGATGGAAAGAGGGA
GACAGAGAAGCTACGGGTTTATGGCAGCTGGGTTAAAAATGCAGATAAAAACGACTATGGTTTGGAGAGAGGTCGAGGCGAACGTCGTCGGGGGGATGACCGGAAAGAAA
CGGAGAGTATTTGTTGGAAATGGTTCCAAAAAAGATGATATTTGTGACAAGGCACAAAGACTGATCACTGATGGATTAGAAAACAAACTTATATCAGTCTTGCAGAGTCT
TATGTCCTCCTCTCACACTGAGCAGATGGAAGGCGTTGATGCAAGCATTGTAAAGAGAAGGCGAGAAAGAGATTGGAGAGAGTTAGCCAGGATCGTTATCGACGACAAGT
TTTGGAGTGGCCAAAGAAGAAGTTCGAGAGAAGATGGTGAGGCCGGAGTCGATTGCAGTTGGGTGTCTCTGATGGATGTTGACCTTTTCACATTTTGGGCTGAAGAGACC
TTGACAGAAGATAATCTAATTTTGGACATTCTTTTTATTGCGTATTATGAGTCATTTGTTAGATGTAATGCTGATCGATGGAGAGCATTGTGTCTGCTTTATAAGGGAAT
CATATCTGGATCTTATAACATGGAAATGCTTGCAATATCAAGTGCGGCAATACATTCTGCTTGTCAAGTTAAAGTTCGATTATTATTTATCCTTATGGAAACATTGGACC
TAGAAAGTCTTCTCCAGATGGTTCATGATCAAACAACTTTCAGGTTATCATCTTGTTTATTAAAGCTTATATATTTTGGATTTATAGGTGGGCAGTTAAATAAGGATGTC
TTACCTTTCTTTTACGAACGAACCATGTAG

mRNA sequence

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Protein sequence

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MRRIGRRRHRGKMEKERLERRKKKEEKKEEERKKGDLDEEDRRKRRRVNPPTLIGRLDGQKLTTEDEGWMERGRQRSYGFMAAGLKMQIKTTMVWREVEANVVGGMTGKK
RRVFVGNGSKKDDICDKAQRLITDGLENKLISVLQSLMSSSHTEQMEGVDASIVKRRRERDWRELARIVIDDKFWSGQRRSSREDGEAGVDCSWVSLMDVDLFTFWAEET
LTEDNLILDILFIAYYESFVRCNADRWRALCLLYKGIISGSYNMEMLAISSAAIHSACQVKVRLLFILMETLDLESLLQMVHDQTTFRLSSCLLKLIYFGFIGGQLNKDV
LPFFYERTM

HG10000558 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome