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HG10000715 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000715
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase
Genome locationChr09:8414529..8415865
RNA-Seq ExpressionHG10000715
SyntenyHG10000715
Gene Ontology termsNA
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP19677.1 unnamed protein product [Coffea canephora]1.7e-1841.03Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV
        AYQI+S FLLDETLAKRTNLI SSDGK+ D+YS +LEELREYMK                                     + LK   ++Q +  +  + 
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV

Query:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP
        ++S   + WK     G+   + +   +GWIASA  SPVFY + YFTTVQDY+ M+P
Subjt:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP

GFS28696.1 hypothetical protein Acr_00g0003340 [Actinidia rufa]1.9e-1739.61Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------
        AYQI+S FLLDET+AKRTNL  S DG+ QDVYSF LEEL+E+MK  L+N            ++ + +F+                 H S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD
             K W++  + G+   + +   +GWIASA ++PV+Y + YFTTVQDY++MD
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD

GFS28697.1 hypothetical protein Acr_00g0003350 [Actinidia rufa]1.9e-1739.61Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------
        AYQI+S FLLDET+AKRTNL  S DG+ QDVYSF LEEL+E+MK  L+N            ++ + +F+                 H S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD
             K W++  + G+   + +   +GWIASA ++PV+Y + YFTTVQDY++MD
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD

XP_017985382.1 PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao]3.8e-1841.94Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILF-----------------VHTSSVISS------
        AYQI+S FLLDE+LAKRTNLI S DG+ QDVYSF+LEEL+E+MK  L N            +I + +F                 VH S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILF-----------------VHTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP
             K W+   + GI   + +   +GWI SA +SPVFY + +FTTVQDY++M+P
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP

XP_027184066.1 uncharacterized protein LOC113782371 [Coffea eugenioides]1.7e-1841.03Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV
        AYQI+S FLLDETLAKRTNLI SSDGK+ D+YS +LEELREYMK                                     + LK   ++Q +  +  + 
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV

Query:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP
        ++S   + WK     G+   + +   +GWIASA  SPVFY + YFTTVQDY+ M+P
Subjt:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP

TrEMBL top hitse value%identityAlignment
A0A068VGI8 DNA-directed RNA polymerase8.3e-1941.03Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV
        AYQI+S FLLDETLAKRTNLI SSDGK+ D+YS +LEELREYMK                                     + LK   ++Q +  +  + 
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMK-------------------------------------EVLKNERIFQILFVHTSSV

Query:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP
        ++S   + WK     G+   + +   +GWIASA  SPVFY + YFTTVQDY+ M+P
Subjt:  ISS---KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP

A0A4D6FUD7 DNA-directed RNA polymerase3.5e-1740.26Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------
        AYQI+S FLLD+T+AKRTNLI SSDG+ QDVYSF LEEL+ +MK  L+N            +I + +F+                 H S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD
             K W+   K  +   + +   +GWIASA ++PVFY + YFTTVQDY++M+
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD

A0A6J5Y9W3 DNA-directed RNA polymerase1.3e-1640.88Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKNERIFQIL---------------FVHTSSVISS-------------------
        AYQI+S FLLDE+LA RTNLI S DGK QDVYSFILE+L+ +MK  L N  +  I+                ++  +++S+                   
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKNERIFQIL---------------FVHTSSVISS-------------------

Query:  ------KLWK---QNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP
              K W+   QN +  IR    +   +GWIASA DSPVFY +  FTTVQDY+ MDP
Subjt:  ------KLWK---QNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP

A0A7J0D761 Multifunctional fusion protein9.2e-1839.61Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------
        AYQI+S FLLDET+AKRTNL  S DG+ QDVYSF LEEL+E+MK  L+N            ++ + +F+                 H S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD
             K W++  + G+   + +   +GWIASA ++PV+Y + YFTTVQDY++MD
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD

A0A7J0D8S5 Multifunctional fusion protein9.2e-1839.61Show/hide
Query:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------
        AYQI+S FLLDET+AKRTNL  S DG+ QDVYSF LEEL+E+MK  L+N            ++ + +F+                 H S  I+       
Subjt:  AYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKN-----------ERIFQILFV-----------------HTSSVISS------

Query:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD
             K W++  + G+   + +   +GWIASA ++PV+Y + YFTTVQDY++MD
Subjt:  -----KLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCATATTTCATTCCGAAGAATCTCTATGCTATTTGCTGCTGGATTTATCATTACTACTCCGATCAAGTTCAACCTTCCTATGTTCTTATCCGGAGTGTTAAACTT
CTCTTATGGAATTCTTTATATTGAATATACCAATTACCCAAGACGCCTCTACGAGGCATATCAGATCATAAGTGACTTTTTGTTGGATGAAACTCTGGCTAAGAGAACGA
ATCTCATTCTTTCTTCGGATGGCAAAGCCCAAGATGTTTATTCTTTCATCCTTGAAGAGCTCAGGGAGTACATGAAAGAAGTACTGAAGAATGAGAGAATCTTTCAAATA
TTGTTTGTACACACTTCATCTGTGATCTCGTCAAAGTTATGGAAACAAAATATGAAGCTTGGAATACGTGATGCAGTTGATATAAACAATATATTAGGATGGATTGCATC
TGCTAGTGATAGTCCTGTTTTTTATGGTATCTCTTATTTTACTACGGTACAGGATTATATTGTAATGGACCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCATATTTCATTCCGAAGAATCTCTATGCTATTTGCTGCTGGATTTATCATTACTACTCCGATCAAGTTCAACCTTCCTATGTTCTTATCCGGAGTGTTAAACTT
CTCTTATGGAATTCTTTATATTGAATATACCAATTACCCAAGACGCCTCTACGAGGCATATCAGATCATAAGTGACTTTTTGTTGGATGAAACTCTGGCTAAGAGAACGA
ATCTCATTCTTTCTTCGGATGGCAAAGCCCAAGATGTTTATTCTTTCATCCTTGAAGAGCTCAGGGAGTACATGAAAGAAGTACTGAAGAATGAGAGAATCTTTCAAATA
TTGTTTGTACACACTTCATCTGTGATCTCGTCAAAGTTATGGAAACAAAATATGAAGCTTGGAATACGTGATGCAGTTGATATAAACAATATATTAGGATGGATTGCATC
TGCTAGTGATAGTCCTGTTTTTTATGGTATCTCTTATTTTACTACGGTACAGGATTATATTGTAATGGACCCATAA
Protein sequenceShow/hide protein sequence
MVHISFRRISMLFAAGFIITTPIKFNLPMFLSGVLNFSYGILYIEYTNYPRRLYEAYQIISDFLLDETLAKRTNLILSSDGKAQDVYSFILEELREYMKEVLKNERIFQI
LFVHTSSVISSKLWKQNMKLGIRDAVDINNILGWIASASDSPVFYGISYFTTVQDYIVMDP