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HG10000815 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000815
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosomal protein S19
Genome locationChr09:9743442..9743732
RNA-Seq ExpressionHG10000815
SyntenyHG10000815
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002222 - Ribosomal protein S19/S15
IPR005732 - Ribosomal protein S19, bacterial-type
IPR020934 - Ribosomal protein S19 conserved site
IPR023575 - Ribosomal protein S19/S15, superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAD83473.2 ribosomal protein S19 [Nicotiana tabacum]1.1e-3380Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

YP_003587264.1 ribosomal protein S19 [Citrullus lanatus]1.3e-3481.72Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

YP_003587364.1 ribosomal protein S19 [Cucurbita pepo]1.3e-3478.12Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ +
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

YP_003587380.1 ribosomal protein S19 [Cucurbita pepo]1.3e-3478.12Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ +
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

YP_009913640.1 ribosomal protein S19 [Luffa acutangula]1.6e-3481.72Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKITEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

TrEMBL top hitse value%identityAlignment
A0A7D6C0E4 Ribosomal protein S198.0e-3581.72Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKITEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

D5I3D4 Ribosomal protein S196.1e-3581.72Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG

D5I3F0 Ribosomal protein S196.1e-3578.12Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ +
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

D5I3G6 Ribosomal protein S196.1e-3578.12Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKITEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ +
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

Q5MA05 Ribosomal protein S195.2e-3480Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

SwissProt top hitse value%identityAlignment
B2S675 30S ribosomal protein S194.0e-1547.96Show/hide
Query:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        RS+WK  FVD +LLK   K+     + V+  K+WSRRSTILP+FVG +  +YNG   V   ++E  VGHKFGEFA TR      T  G G  KK  +K
Subjt:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

P26874 Ribosomal protein S19, mitochondrial4.2e-1757.14Show/hide
Query:  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTR------KRRVP-KTNIGP
        RSIWK  FVD  L K K      +  +IWSRRS ILP+FVG   +IYNGK FV  KITE  VGHKFGEFA TR      KR +P KT I P
Subjt:  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTR------KRRVP-KTNIGP

P27527 Ribosomal protein S19, mitochondrial2.2e-3476.84Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK
        M  RSIWK  FVDAFLL+MK K D + NRKIWSRRS+ILPEFV   VRIYNGKTFVRCKITEG+VGHKFGEFA TRKRR  +TNIGPG RK+G K
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK

P39697 40S ribosomal protein S19, mitochondrial7.7e-2775.32Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

Q98N53 30S ribosomal protein S193.0e-1547.96Show/hide
Query:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK
        RSIWK  F+D +LLK  +K+     + V+  K+WSRRSTILP+FVG +  +YNG+  V   + E  VGHKFGEFA TR      T  G G  KK  +K
Subjt:  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK

Arabidopsis top hitse value%identityAlignment
AT1G04270.1 cytosolic ribosomal protein S152.5e-0438.64Show/hide
Query:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        R   I+PE +G+ + +YNGKTF + +I    +GH   EF+++ K
Subjt:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

AT1G04270.2 cytosolic ribosomal protein S152.5e-0438.64Show/hide
Query:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        R   I+PE +G+ + +YNGKTF + +I    +GH   EF+++ K
Subjt:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

AT5G09490.1 Ribosomal protein S19 family protein5.0e-0540.91Show/hide
Query:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        R   I+PE +G+ + +YNGKTF + +I    +GH   EF++T K
Subjt:  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

AT5G47320.1 ribosomal protein S195.5e-2875.32Show/hide
Query:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK
        M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK

ATCG00820.1 ribosomal protein S195.7e-0938.67Show/hide
Query:  RSIWKSCFVDAFLLKMKNKIDPVLNRKI---WSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMT
        RS+ K+ FV   LL+   K++    ++I   WSR STI+P  +G+++ I+NG+  +   I +  VGHK GEF+ T
Subjt:  RSIWKSCFVDAFLLKMKNKIDPVLNRKI---WSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTAC
GATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTA
TGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTAC
GATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTA
TGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAGTAA
Protein sequenceShow/hide protein sequence
MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK