; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10000866 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10000866
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibosome-binding factor PSRP1
Genome locationChr09:10301903..10307521
RNA-Seq ExpressionHG10000866
SyntenyHG10000866
Gene Ontology termsGO:0045900 - negative regulation of translational elongation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043022 - ribosome binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
InterPro domainsIPR003489 - Ribosome hibernation promoting factor/RaiA
IPR032528 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal
IPR036567 - Ribosome hibernation promotion factor-like
IPR038416 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576623.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.2e-11684.86Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SF    S + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        RKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

KAG7014676.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-11684.86Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SFSL    + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        RKIKEKDSD GRHMKGFDRSK+R+PAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

XP_004147328.1 ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]7.3e-12990.32Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSLSPP              SSST+S+FP+SFSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

XP_008460813.1 PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]2.2e-12588.89Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

XP_038900446.1 ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]1.5e-12187.9Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL--SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGP
        +A LTSSM  ++L DHSL           SSSSSSSSSTISFFP+SFSLHFSALKV AL  SS  SAFFNSCKSFRT ETASRNRH SNSF++RMSWDGP
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL--SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGP

Query:  LSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
        LSSVKLIVQ KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
Subjt:  LSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI

Query:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KEKDSDRGRHMKGFDRSKVREPAPIVVEDE+EEVF+ED GEVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEET
Subjt:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

TrEMBL top hitse value%identityAlignment
A0A1S3CCT7 ribosome-binding factor PSRP1, chloroplastic1.1e-12588.89Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

A0A5D3BQR1 Ribosome-binding factor PSRP11.1e-12588.89Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS
        +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALSSN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LS
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLS

Query:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE
        SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSIIQRKLRKIKE
Subjt:  SVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE

Query:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  KDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

A0A6J1CJG5 ribosome-binding factor PSRP1, chloroplastic7.4e-11181.05Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWD
        +ATLTSSM  N+L                  S+ SSSST S FP+SFSL    + SALK+  LSS+TS FFNSC  F TI+ A RNRH +NSF+IRMSWD
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWD

Query:  GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR
        GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSIIQRKLR
Subjt:  GPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR

Query:  KIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        KIKEKDSDRGRHMKGFDR KVREPAPIVVED  EEEEV  ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  KIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

A0A6J1E3S3 ribosome-binding factor PSRP1, chloroplastic1.3e-11583.8Show/hide
Query:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW
        +A LTSSMQ N+LS HSL+P          SSSSSSSST+S FP+SFSL    + + LK  ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSW
Subjt:  VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSW

Query:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL
        DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKL
Subjt:  DGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL

Query:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        RKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  RKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

A0A6J1J523 ribosome-binding factor PSRP1, chloroplastic3.9e-11288.33Show/hide
Query:  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE
        SSSSSSSSSSST+S FP+SFSL    + + LK+ ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE
Subjt:  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVE

Query:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAP
        EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAP
Subjt:  EKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAP

Query:  IVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        IVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Subjt:  IVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

SwissProt top hitse value%identityAlignment
P19954 Ribosome-binding factor PSRP1, chloroplastic2.1e-7056.83Show/hide
Query:  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA
        +++P L++S S+S + SS+ ++                    LSS  S F NSC     +   S     +    + MSWDGPLSSVKLI+QG+NLE+++ 
Subjt:  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA

Query:  VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK
        V+ HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SD GRHMKGF+RSK
Subjt:  VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK

Query:  VREPAPIVVEDEE--EEV------FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
        VR+P P+ +  EE  EEV         +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEET
Subjt:  VREPAPIVVEDEE--EEV------FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET

P47908 Ribosome hibernation promotion factor3.9e-2439.11Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK
        +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EVT++     V+RA+E +E +YASIDLVS  I R+LRK KEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK

Query:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETD
        +  +  H+    + K  E  P   +   + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T+
Subjt:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETD

P74518 Ribosome hibernation promotion factor1.3e-2741.53Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI
        +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     V+RA+E +E +YASIDLV+  I R+LRK 
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI

Query:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETDK
        KE+  D  +       S++ E  P+     EE +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++TD+
Subjt:  KEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETDK

Q49VV1 Ribosome hibernation promotion factor3.1e-1330.94Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK
        ++  + G+NL +T+A++ ++EEK+GK ++++ + V      + V+  +        + EVT+  KK   +RAEE  + +YA IDL+++ ++R++RK K +
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK

Query:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVID--EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETD
         + R R+ +G   +    P     E++E    Q D  E  +  EI+R K F + P+  EEA+ Q+  + HDF+ F + ETD
Subjt:  DSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVID--EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETD

Q9RVE7 Ribosome hibernation promotion factor1.6e-1432.18Show/hide
Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDR
        + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++RAEE    +YA+ID  S +++R+LRK K      
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDR

Query:  GRHMKGFDRSK---VREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN
         R+MK     +   +  PA   V  +      +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++
Subjt:  GRHMKGFDRSK---VREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN

Arabidopsis top hitse value%identityAlignment
AT5G24490.1 30S ribosomal protein, putative1.5e-7974.63Show/hide
Query:  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
        R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Subjt:  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV

Query:  YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA-PIVVEDEEEEV-----FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF
        YA IDLVS+IIQRKLRKIKEKDSD GRHMKGF+R KVREP    VVED E+        +E+  ++I EIVRTK F+MPPLTV EA+EQL+ + HDFYGF
Subjt:  YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA-PIVVEDEEEEV-----FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF

Query:  RNEET
        +NEET
Subjt:  RNEET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCT
TCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCC
TGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTA
ATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTA
GATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAG
GAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATG
AAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATT
GTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACT
GACAAACAAGTTGAAGAGGAATCTTCTAACGATCATGTGCCCATTGCGGCTTTGAGTAAGAGTAAGAAACCAACTACTGTTCTGAAATCCCTTAAGAAAATAAAA
TTTGAGATAAGGCTTGTGTCTGGTGAAAAGAAGAAGAAGGTTTCCTCTAAGCTGAAGAAACAAAGTGATCCTGATGAGTGTGTTGAATCCAATCAGGACTATGAT
GGCACATCTGGCTCTGAAGATGATGCCTCTATTCAAGATCCCAAGAGTTCTTCTCATTTAATTAGTAGGAAGGTACCTCCAAATGTTGTATCTGTGTCACTAGAT
GAAATCTCTTTTCATTCAAAAGAGAGTGTAGGACGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCT
TCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCC
TGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTA
ATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTA
GATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAG
GAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATG
AAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATT
GTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACT
GACAAACAAGTTGAAGAGGAATCTTCTAACGATCATGTGCCCATTGCGGCTTTGAGTAAGAGTAAGAAACCAACTACTGTTCTGAAATCCCTTAAGAAAATAAAA
TTTGAGATAAGGCTTGTGTCTGGTGAAAAGAAGAAGAAGGTTTCCTCTAAGCTGAAGAAACAAAGTGATCCTGATGAGTGTGTTGAATCCAATCAGGACTATGAT
GGCACATCTGGCTCTGAAGATGATGCCTCTATTCAAGATCCCAAGAGTTCTTCTCATTTAATTAGTAGGAAGGTACCTCCAAATGTTGTATCTGTGTCACTAGAT
GAAATCTCTTTTCATTCAAAAGAGAGTGTAGGACGTTAG
Protein sequenceShow/hide protein sequence
MVATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKL
IVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHM
KGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETDKQVEEESSNDHVPIAALSKSKKPTTVLKSLKKIK
FEIRLVSGEKKKKVSSKLKKQSDPDECVESNQDYDGTSGSEDDASIQDPKSSSHLISRKVPPNVVSVSLDEISFHSKESVGR