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HG10001052 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001052
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCOP9 signalosome complex subunit 2
Genome locationChr09:13583426..13584002
RNA-Seq ExpressionHG10001052
SyntenyHG10001052
Gene Ontology termsGO:0000338 - protein deneddylation (biological process)
GO:0000502 - proteasome complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0008180 - COP9 signalosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS37825.1 proteasome family protein [Actinidia rufa]1.4e-1991.38Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL
        MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE ++L
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL

KAG6412554.1 hypothetical protein SASPL_125234 [Salvia splendens]5.0e-2094.64Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECL
        MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGAL GFAEVVRMEPEKAECL
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECL

XP_008449850.1 PREDICTED: COP9 signalosome complex subunit 2 [Cucumis melo]1.9e-1998.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

XP_008786801.1 COP9 signalosome complex subunit 2 isoform X1 [Phoenix dactylifera]1.9e-1998.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

XP_038901340.1 COP9 signalosome complex subunit 2 [Benincasa hispida]1.9e-1998.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

TrEMBL top hitse value%identityAlignment
A0A0A0KZ23 PCI domain-containing protein9.1e-2098.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

A0A4D9C4Q3 COP9 signalosome complex subunit 21.4e-2068.48Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLLNDQVMLSENGKHWIKGHMILIVDLDPIWLGILHG
        MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGAL GFAEVVRMEPEKAEC     QV  SE       GH+I I  L   +L +  G
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLLNDQVMLSENGKHWIKGHMILIVDLDPIWLGILHG

A0A5A7TF99 COP9 signalosome complex subunit 29.1e-2098.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

A0A5D3DEF1 COP9 signalosome complex subunit 29.1e-2098.15Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

A0A7J0DLT2 Proteasome family protein7.0e-2091.38Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL
        MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE ++L
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL

SwissProt top hitse value%identityAlignment
P61201 COP9 signalosome complex subunit 21.2e-0856.6Show/hide
Query:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Subjt:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

P61202 COP9 signalosome complex subunit 21.2e-0856.6Show/hide
Query:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Subjt:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

P61203 COP9 signalosome complex subunit 21.2e-0856.6Show/hide
Query:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Subjt:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

Q6IQT4 COP9 signalosome complex subunit 21.2e-0856.6Show/hide
Query:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Subjt:  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

Q8W207 COP9 signalosome complex subunit 23.7e-1883.33Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSD+E EEQDVDIENQYYNSKG+VET+PE AL+GFAEVV+MEPEKA+
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE

Arabidopsis top hitse value%identityAlignment
AT2G26990.1 proteasome family protein2.6e-1983.33Show/hide
Query:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
        MEDY FEYSD+E EEQDVDIENQYYNSKG+VET+PE AL+GFAEVV+MEPEKA+
Subjt:  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACTATGTTTTCGAGTACTCGGACGATGAACCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTTGAAACGGACCCCGAAGG
AGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGTTTGCTTCTCAATGACCAGGTCATGCTTTCTGAAAATGGAAAGCATTGGATCAAAG
GACACATGATTCTTATTGTTGATCTTGATCCTATATGGCTAGGGATTCTTCATGGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACTATGTTTTCGAGTACTCGGACGATGAACCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTTGAAACGGACCCCGAAGG
AGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGTTTGCTTCTCAATGACCAGGTCATGCTTTCTGAAAATGGAAAGCATTGGATCAAAG
GACACATGATTCTTATTGTTGATCTTGATCCTATATGGCTAGGGATTCTTCATGGTAGATAA
Protein sequenceShow/hide protein sequence
MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLLNDQVMLSENGKHWIKGHMILIVDLDPIWLGILHGR