CuGenDBv2

Gene ID	HG10001141
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Histone H3
Genome location	Chr09:14347935..14348345
RNA-Seq Expression	HG10001141
Synteny	HG10001141
Gene Ontology terms	GO:0000786 - nucleosome (cellular component) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR000164 - Histone H3/CENP-A IPR007125 - Histone H2A/H2B/H3 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

EOY31042.1 Histone superfamily protein [Theobroma cacao]

1.7e-61

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

XP_016690064.1 histone H3.2 [Gossypium hirsutum]

1.7e-61

97.79

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

XP_018474324.1 PREDICTED: histone H3-like centromeric protein CSE4 [Raphanus sativus]

1.7e-61

97.79

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

XP_022154562.1 uncharacterized protein LOC111021800 [Momordica charantia]

1.7e-61

97.79

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

XP_030970207.1 uncharacterized protein LOC115990517 [Quercus lobata]

1.7e-61

97.79

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

TrEMBL top hits

e value

%identity

Alignment

A0A059AF37 Histone H3

8.3e-62

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

A0A1U7XR83 Histone H3

8.3e-62

97.79

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Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

C5XPA5 Histone H3

8.3e-62

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

K4AY75 Histone H3

8.3e-62

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

M5WKJ0 Histone H3

8.3e-62

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

SwissProt top hits

e value

%identity

Alignment

P59226 Histone H3.2

2.2e-64

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

P69246 Histone H3.2

2.2e-64

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

Q6LBE3 Histone H3.2

2.2e-64

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

Q6LCK1 Histone H3.2

2.2e-64

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

Q71T45 Histone H3.2

2.2e-64

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

Arabidopsis top hits

e value

%identity

Alignment

AT1G09200.1 Histone superfamily protein

1.6e-65

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

AT3G27360.1 Histone superfamily protein

1.6e-65

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

AT5G10390.1 Histone superfamily protein

1.6e-65

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

AT5G10400.1 Histone superfamily protein

1.6e-65

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

AT5G65360.1 Histone superfamily protein

1.6e-65

97.79

Show/hide

Query:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
        MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRP TVALREIRKYQK TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY
Subjt:  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY

Query:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA
        LVGLFEDTNLCAIHAKRVTIMPKDIQLARRI GERA
Subjt:  LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIMGERA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCCGAACTAAGCAAACCGCTAGGAAATCAACCGGAGGGAAGGCTCCGAGGAAGCAACTGGCCACTAAGGCCGCCAGGAAATCCGCTCCGGCGACCGGCGGAGTGAA
GAAGCCTCACAGGTTCAGGCCATGGACGGTCGCGTTGAGAGAGATCCGTAAGTATCAGAAGAGGACAGAGCTTCTTATCAGGAAACTTCCGTTCCAGAGATTGGTGAGAG
AAATTGCTCAAGATTTCAAGACTGACCTTCGCTTCCAGAGTAGCGCCGTTGCGGCCCTTCAGGAGGCGGCCGAGGCTTACCTCGTCGGGCTCTTCGAAGATACCAATCTT
TGTGCCATTCATGCCAAGAGGGTTACCATTATGCCTAAGGATATCCAGCTCGCTAGAAGAATCATGGGTGAGAGGGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPWTVALREIRKYQKRTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL
CAIHAKRVTIMPKDIQLARRIMGERA

HG10001141 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome