; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001228 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001228
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationChr09:15138979..15140788
RNA-Seq ExpressionHG10001228
SyntenyHG10001228
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041856.1 hypothetical protein E6C27_scaffold67G002390 [Cucumis melo var. makuwa]5.9e-0453.06Show/hide
Query:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL
        MG+   DRKVF V   GNGR I++EE+ G K G++ L+ GT  WVRD L
Subjt:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL

KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.2e-0746.75Show/hide
Query:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGR
        GR+I +EER G +  K++LELGT  WVRDCLV   ELSN + FW RR L++ ++      N  GR  L +  S +GR
Subjt:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGR

KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]2.0e-0453.06Show/hide
Query:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL
        MG+   DRK F V  +G  R+I++EER G K GK++L+ GT  WVRDCL
Subjt:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-0453.06Show/hide
Query:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL
        MG+   DRK F V  +G  R+I++EER G K GK++L+ GT  WVRDCL
Subjt:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCL

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]8.8e-3234.16Show/hide
Query:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVF
        MG++  DRK F V      R+I++EER G   GK++L+ GT  WVRDCLV     +N + FW +RRL+  IIFF VL N +GRFA+LSLESFK R++++F
Subjt:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVF

Query:  ILQGQKAVGWSAVTKEFSDLLPYLVSIRIK-------SPQQESHSDV-HLLRRMAVAEGRGLNFNAGWVSALDIPPFLRT------KQVISL-------L
        I +G +  GW ++  E S LLP+  +I  K       +  +E+   +  ++RR     G+ + F   W S + I     +      KQ++          
Subjt:  ILQGQKAVGWSAVTKEFSDLLPYLVSIRIK-------SPQQESHSDV-HLLRRMAVAEGRGLNFNAGWVSALDIPPFLRT------KQVISL-------L

Query:  AEWCRGL---IEGSDLRGVN----------------------------NWLEEVCFEAKGNLNGFTSLGCFINHESCSFSS
          +C  L   I GSD    N                            NW+ EVCF+A GN +GF    C +N++  SFSS
Subjt:  AEWCRGL---IEGSDLRGVN----------------------------NWLEEVCFEAKGNLNGFTSLGCFINHESCSFSS

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein7.5e-1349.43Show/hide
Query:  IDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVFILQGQKAVGWSAVTKEFSDLL
        ++L+ GT   VRDCL      +N   FW RR L   IIFF VL NARGRF +LSLESFKG+++++FI +G K  G  +  +E S LL
Subjt:  IDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVFILQGQKAVGWSAVTKEFSDLL

A0A0A0KGZ5 Uncharacterized protein3.3e-0851.39Show/hide
Query:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHV-LSNARGRFALLSL
        GR+I +EE  G + GK++LELG   WV DCLV   ELSN +GFW RR L+ T IFF   L   RG    L L
Subjt:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHV-LSNARGRFALLSL

A0A0A0LY03 Uncharacterized protein1.5e-2439.55Show/hide
Query:  GNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVFILQGQKAVGWSAVTKE
        G+ R+I++EER G K GK+DL+LGTL WV D L    + S  +G W R++LD  IIFF VL N   RF ++SL+SFKGR+++VFI +G +  GW ++ +E
Subjt:  GNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVFILQGQKAVGWSAVTKE

Query:  F-----SDLLPYLVSIRI---KSPQQESH---------SDVHLL------RRMAVAEGRGLNFNAGWVSALDIPPFL
               ++L  L+   I   KS  +  H             LL       R+ + + R   F AGWV+ LD+PPFL
Subjt:  F-----SDLLPYLVSIRI---KSPQQESH---------SDVHLL------RRMAVAEGRGLNFNAGWVSALDIPPFL

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X25.6e-0846.75Show/hide
Query:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGR
        GR+I +EER G +  K++LELGT  WVRDCLV   ELSN + FW RR L++ ++      N  GR  L +  S +GR
Subjt:  GRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGR

A0A5D3CQQ0 Uncharacterized protein4.2e-3234.16Show/hide
Query:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVF
        MG++  DRK F V      R+I++EER G   GK++L+ GT  WVRDCLV     +N + FW +RRL+  IIFF VL N +GRFA+LSLESFK R++++F
Subjt:  MGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVF

Query:  ILQGQKAVGWSAVTKEFSDLLPYLVSIRIK-------SPQQESHSDV-HLLRRMAVAEGRGLNFNAGWVSALDIPPFLRT------KQVISL-------L
        I +G +  GW ++  E S LLP+  +I  K       +  +E+   +  ++RR     G+ + F   W S + I     +      KQ++          
Subjt:  ILQGQKAVGWSAVTKEFSDLLPYLVSIRIK-------SPQQESHSDV-HLLRRMAVAEGRGLNFNAGWVSALDIPPFLRT------KQVISL-------L

Query:  AEWCRGL---IEGSDLRGVN----------------------------NWLEEVCFEAKGNLNGFTSLGCFINHESCSFSS
          +C  L   I GSD    N                            NW+ EVCF+A GN +GF    C +N++  SFSS
Subjt:  AEWCRGL---IEGSDLRGVN----------------------------NWLEEVCFEAKGNLNGFTSLGCFINHESCSFSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGGTATTGAGGCTCTAAGAGGGATGGGGAGAGTCACTGCGGATAGAAAAGTGTTCTCTGTTAACAAGAGTGGAAATGGGAGAAGGATTTTTTTAGAAGAGAG
GAAAGGTGTAAAGGTTGGTAAGATCGATTTGGAGCTGGGCACATTGCCTTGGGTTAGAGATTGTCTGGTGGTTGTTAAGGAGTTGAGCAATCACGTTGGTTTTTGGCATA
GGAGAAGGTTAGATTCGACAATTATCTTCTTTCATGTTCTCTCTAATGCAAGGGGCCGTTTTGCTCTTTTATCGCTAGAATCTTTTAAGGGAAGGAGATCTCAAGTTTTC
ATTCTACAAGGACAAAAGGCTGTGGGATGGAGTGCGGTTACCAAGGAGTTCTCTGATCTTCTTCCCTACCTCGTCTCAATTAGAATCAAGAGTCCTCAACAGGAGAGTCA
TTCTGATGTTCATCTGTTAAGAAGAATGGCCGTGGCAGAAGGAAGAGGACTCAATTTCAATGCTGGCTGGGTTTCGGCGCTGGACATCCCCCCTTTCCTCAGAACTAAAC
AAGTAATTTCTTTGTTAGCCGAATGGTGCAGAGGTCTAATTGAAGGTTCAGACTTGAGAGGGGTGAATAATTGGCTCGAAGAAGTCTGTTTTGAGGCAAAAGGAAATTTG
AATGGCTTTACTTCGTTGGGTTGCTTCATCAACCATGAGAGTTGCTCCTTTTCGTCTGACCAAGGGATTGATGTCAGGTCAATTTGTATAGAGGGTTGTCAGTCATGTGA
AGGCCTCAGGGAGACGACAAAACTTTCAGGGAAGAAGTATCCAGCGGTTGAGTTGGTCTCTAGTGGGCCTGTTCTTTTGGAGGCCCATCGACCCCTAGACGTCCTACCCA
AAACATCAGCTAGGATGCGGGATCCCAGTGGTGGTAATGGACCTGTTTTATTGGAGACCCACAAGCCCATTGAAGTTATGACCAAAACCTTAGAGAGGGCTTGCGGAAAG
GAGAACTCAGTGGATCAGGTTGGGCTGTGTGCGCTTGAGGAGTTTAGAGGATTGTTGTGGGAAAAAGCCATGGGTGTTGGGGCGGATGATCCTTTAGACAATGATGAGGA
TTTCTGCTTAGATTTGTCTATCATTAGTTATTCCGAGGATGAGTCCTTGTTAACGCTGGTCATCCAAGAGCTGGATCCTTCGAGTAATATCAAGATGCTGTTTCAGGAAG
GCGAGACTTCGAAAGCGCACAGTCGGAAAGGCATTCACGGGTTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGGGTATTGAGGCTCTAAGAGGGATGGGGAGAGTCACTGCGGATAGAAAAGTGTTCTCTGTTAACAAGAGTGGAAATGGGAGAAGGATTTTTTTAGAAGAGAG
GAAAGGTGTAAAGGTTGGTAAGATCGATTTGGAGCTGGGCACATTGCCTTGGGTTAGAGATTGTCTGGTGGTTGTTAAGGAGTTGAGCAATCACGTTGGTTTTTGGCATA
GGAGAAGGTTAGATTCGACAATTATCTTCTTTCATGTTCTCTCTAATGCAAGGGGCCGTTTTGCTCTTTTATCGCTAGAATCTTTTAAGGGAAGGAGATCTCAAGTTTTC
ATTCTACAAGGACAAAAGGCTGTGGGATGGAGTGCGGTTACCAAGGAGTTCTCTGATCTTCTTCCCTACCTCGTCTCAATTAGAATCAAGAGTCCTCAACAGGAGAGTCA
TTCTGATGTTCATCTGTTAAGAAGAATGGCCGTGGCAGAAGGAAGAGGACTCAATTTCAATGCTGGCTGGGTTTCGGCGCTGGACATCCCCCCTTTCCTCAGAACTAAAC
AAGTAATTTCTTTGTTAGCCGAATGGTGCAGAGGTCTAATTGAAGGTTCAGACTTGAGAGGGGTGAATAATTGGCTCGAAGAAGTCTGTTTTGAGGCAAAAGGAAATTTG
AATGGCTTTACTTCGTTGGGTTGCTTCATCAACCATGAGAGTTGCTCCTTTTCGTCTGACCAAGGGATTGATGTCAGGTCAATTTGTATAGAGGGTTGTCAGTCATGTGA
AGGCCTCAGGGAGACGACAAAACTTTCAGGGAAGAAGTATCCAGCGGTTGAGTTGGTCTCTAGTGGGCCTGTTCTTTTGGAGGCCCATCGACCCCTAGACGTCCTACCCA
AAACATCAGCTAGGATGCGGGATCCCAGTGGTGGTAATGGACCTGTTTTATTGGAGACCCACAAGCCCATTGAAGTTATGACCAAAACCTTAGAGAGGGCTTGCGGAAAG
GAGAACTCAGTGGATCAGGTTGGGCTGTGTGCGCTTGAGGAGTTTAGAGGATTGTTGTGGGAAAAAGCCATGGGTGTTGGGGCGGATGATCCTTTAGACAATGATGAGGA
TTTCTGCTTAGATTTGTCTATCATTAGTTATTCCGAGGATGAGTCCTTGTTAACGCTGGTCATCCAAGAGCTGGATCCTTCGAGTAATATCAAGATGCTGTTTCAGGAAG
GCGAGACTTCGAAAGCGCACAGTCGGAAAGGCATTCACGGGTTCGCTTAA
Protein sequenceShow/hide protein sequence
MDMGIEALRGMGRVTADRKVFSVNKSGNGRRIFLEERKGVKVGKIDLELGTLPWVRDCLVVVKELSNHVGFWHRRRLDSTIIFFHVLSNARGRFALLSLESFKGRRSQVF
ILQGQKAVGWSAVTKEFSDLLPYLVSIRIKSPQQESHSDVHLLRRMAVAEGRGLNFNAGWVSALDIPPFLRTKQVISLLAEWCRGLIEGSDLRGVNNWLEEVCFEAKGNL
NGFTSLGCFINHESCSFSSDQGIDVRSICIEGCQSCEGLRETTKLSGKKYPAVELVSSGPVLLEAHRPLDVLPKTSARMRDPSGGNGPVLLETHKPIEVMTKTLERACGK
ENSVDQVGLCALEEFRGLLWEKAMGVGADDPLDNDEDFCLDLSIISYSEDESLLTLVIQELDPSSNIKMLFQEGETSKAHSRKGIHGFA