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HG10001232 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001232
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPlant-specific transcription factor YABBY family protein
Genome locationChr09:15198643..15203514
RNA-Seq ExpressionHG10001232
SyntenyHG10001232
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140176.1 putative axial regulator YABBY 2 [Cucumis sativus]2.0e-5695.93Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSS+K TKIGSLD SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA

Query:  AKNWAHFPHIHFGLKLDGNKQTK
        AKNWAHFPHIHFGLKLDGNKQTK
Subjt:  AKNWAHFPHIHFGLKLDGNKQTK

XP_038902331.1 putative axial regulator YABBY 2 isoform X1 [Benincasa hispida]2.5e-5998.36Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTAA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA

Query:  KNWAHFPHIHFGLKLDGNKQTK
        KNWAHFPHIHFGLKLDGNKQTK
Subjt:  KNWAHFPHIHFGLKLDGNKQTK

XP_038902332.1 putative axial regulator YABBY 2 isoform X2 [Benincasa hispida]5.7e-5695.9Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSSSKCTKIGSLDSAERDQHRIPPIR  +KRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTAA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA

Query:  KNWAHFPHIHFGLKLDGNKQTK
        KNWAHFPHIHFGLKLDGNKQTK
Subjt:  KNWAHFPHIHFGLKLDGNKQTK

XP_038902333.1 putative axial regulator YABBY 2 isoform X3 [Benincasa hispida]2.5e-5998.36Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTAA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA

Query:  KNWAHFPHIHFGLKLDGNKQTK
        KNWAHFPHIHFGLKLDGNKQTK
Subjt:  KNWAHFPHIHFGLKLDGNKQTK

XP_038902334.1 putative axial regulator YABBY 2 isoform X4 [Benincasa hispida]2.5e-5998.36Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTAA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAA

Query:  KNWAHFPHIHFGLKLDGNKQTK
        KNWAHFPHIHFGLKLDGNKQTK
Subjt:  KNWAHFPHIHFGLKLDGNKQTK

TrEMBL top hitse value%identityAlignment
A0A0A0KGY1 Uncharacterized protein9.6e-5795.93Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSS+K TKIGSLD SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA

Query:  AKNWAHFPHIHFGLKLDGNKQTK
        AKNWAHFPHIHFGLKLDGNKQTK
Subjt:  AKNWAHFPHIHFGLKLDGNKQTK

A0A1S4DXR9 putative axial regulator YABBY 22.4e-5595.16Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA
        MGASLQVVPPQDSQQGHKQQQVNAGDS+KDRASSSSS+K TKIGSLD SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFSTA
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLD-SAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTA

Query:  AKNWAHFPHIHFGLKLDG-NKQTK
        AKNWAHFPHIHFGLKLDG NKQTK
Subjt:  AKNWAHFPHIHFGLKLDG-NKQTK

A0A6J1FT58 putative axial regulator YABBY 2 isoform X11.1e-4984.13Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF
        MGASLQV+PPQDS  G+KQQQV+ GD +KDR    +SSSSSSKCTKI SLDSAERDQHRIPPIRPPEK+QRVPSAYNRFIKEEIQRIKANNPDISHREAF
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF

Query:  STAAKNWAHFPHIHFGLKLDGNKQTK
        STAAKNWAH+PHI  G K+DGNKQTK
Subjt:  STAAKNWAHFPHIHFGLKLDGNKQTK

A0A6J1FVQ9 putative axial regulator YABBY 2 isoform X31.1e-4984.13Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF
        MGASLQV+PPQDS  G+KQQQV+ GD +KDR    +SSSSSSKCTKI SLDSAERDQHRIPPIRPPEK+QRVPSAYNRFIKEEIQRIKANNPDISHREAF
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF

Query:  STAAKNWAHFPHIHFGLKLDGNKQTK
        STAAKNWAH+PHI  G K+DGNKQTK
Subjt:  STAAKNWAHFPHIHFGLKLDGNKQTK

A0A6J1JFK2 putative axial regulator YABBY 2 isoform X26.6e-5084.13Show/hide
Query:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF
        MGAS+QV+PPQDSQ G+KQQQV+ GD +KDR    +SSSSSSKCTKI SLDSAERDQHRIPPIRPPEK+QRVPSAYNRFIKEEIQRIKANNPDISHREAF
Subjt:  MGASLQVVPPQDSQQGHKQQQVNAGDSNKDR----ASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAF

Query:  STAAKNWAHFPHIHFGLKLDGNKQTK
        STAAKNWAH+PHI  G K+DGNKQTK
Subjt:  STAAKNWAHFPHIHFGLKLDGNKQTK

SwissProt top hitse value%identityAlignment
A2X7Q3 Protein YABBY 42.7e-2487.3Show/hide
Query:  RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQT
        RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D G K+T
Subjt:  RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQT

O22152 Axial regulator YABBY 13.2e-2579.73Show/hide
Query:  QHRI---PPI-RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK
        QH I   PP+ RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K
Subjt:  QHRI---PPI-RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK

Q8GW46 Axial regulator YABBY 53.1e-2875Show/hide
Query:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK
        SSS   TKI S  S      +    RPPEKRQRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQ K
Subjt:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK

Q9XFB0 Putative axial regulator YABBY 22.3e-3164.66Show/hide
Query:  PPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH
        P     Q H+Q   +   + KD ASSS S+        ++ +R+  R+PPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPH
Subjt:  PPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH

Query:  IHFGLKLDGNKQTKEV
        IHFGLKLDGNK+ K++
Subjt:  IHFGLKLDGNKQTKEV

Q9XFB1 Axial regulator YABBY 39.3e-2577.78Show/hide
Query:  SLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD
        S+D  +      P  RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Subjt:  SLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein1.6e-3264.66Show/hide
Query:  PPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH
        P     Q H+Q   +   + KD ASSS S+        ++ +R+  R+PPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPH
Subjt:  PPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH

Query:  IHFGLKLDGNKQTKEV
        IHFGLKLDGNK+ K++
Subjt:  IHFGLKLDGNKQTKEV

AT2G26580.1 plant-specific transcription factor YABBY family protein2.2e-2975Show/hide
Query:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK
        SSS   TKI S  S      +    RPPEKRQRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQ K
Subjt:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK

AT2G26580.2 plant-specific transcription factor YABBY family protein2.2e-2975Show/hide
Query:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK
        SSS   TKI S  S      +    RPPEKRQRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQ K
Subjt:  SSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK

AT2G45190.1 Plant-specific transcription factor YABBY family protein2.3e-2679.73Show/hide
Query:  QHRI---PPI-RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK
        QH I   PP+ RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K
Subjt:  QHRI---PPI-RPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK

AT4G00180.1 Plant-specific transcription factor YABBY family protein6.6e-2677.78Show/hide
Query:  SLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD
        S+D  +      P  RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Subjt:  SLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGAGATTCAAACAAAGACAGAGCTTCTTCTTCTTCTTC
TTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGTGTTCCTTCAGCGTATAATA
GGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATCCAC
TTTGGGCTGAAGCTGGATGGAAATAAACAAACAAAAGAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGAGATTCAAACAAAGACAGAGCTTCTTCTTCTTCTTC
TTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGTGTTCCTTCAGCGTATAATA
GGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATCCAC
TTTGGGCTGAAGCTGGATGGAAATAAACAAACAAAAGAAGTTTGA
Protein sequenceShow/hide protein sequence
MGASLQVVPPQDSQQGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH
FGLKLDGNKQTKEV