; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001280 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001280
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S acidic ribosomal protein family
Genome locationChr09:15687438..15688181
RNA-Seq ExpressionHG10001280
SyntenyHG10001280
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4388.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA GA G GAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4388.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA GA G GAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]4.0e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G  G GAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]4.0e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA GA G GAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_038901119.1 60S acidic ribosomal protein P2B-like [Benincasa hispida]2.5e-4593.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGN SPGLDDVKSILNSVGAEVDDDRIGLLLS+VKGKDITELIASGREKLASVPSGGG+IAVSAPA GA G GAA AAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0KGP6 Uncharacterized protein4.3e-4389.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVKSILNSVGAE+D++RI LLL+EVKGKDITELIASGREKLASVPSGGG+IAVSA A GATG GAA A AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A1S3C8T5 60S acidic ribosomal protein P2B-like4.3e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREKLASVPSGGG+IAVSA A GA G GAAPA AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A5A7SR49 60S acidic ribosomal protein P2B-like4.3e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG+DDVK+ILNSVG E+D++RI LLLSEVKGKD+TELIASGREKLASVPSGGG+IAVSA A GA G GAAPA AEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like1.9e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA G  G GAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like1.9e-4387.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD+DRI  LLS+VKGKDITELIASGREKLASVPSGGG++ ++APA GA G GAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B7.0e-3574.78Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKV+AAYLLAVLGGNTSP  DDVKSIL SVGAE D++++  LL+E+K KDITE+IA+GRE+L+SVPSGGG+I + APAA A G GAAP A E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESD+DMGFSLFD
Subjt:  EKEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P22.1e-3171.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKV+AA+LLA+LGGNTSP  +D+KSIL SVGA+ DDD+I LLLS+VKGKDITELIASGRE+LASVPSGGG +AV+A A G  G   A AA E KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
          EESD+++GFSLFD
Subjt:  EKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A8.6e-3371.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MK VAAYLLAVL GN SP  DD+ +IL SVG EVD++++ LLLS++ GKDITELIA+GREK ASVP GGG +AV   AA A  AG A  AAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-11.6e-3169.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAAGATGAGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +G  G G AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAAGATGAGAAPAAAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-23.6e-3168.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A    G G   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family2.6e-3268.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A    G G   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family2.6e-3268.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A    G G   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family2.6e-3268.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPSGGG     A A    G G   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family1.2e-3269.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAAGATGAGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GREKLASVPS GGG +AV++  +G  G G AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPS-GGGSIAVSAPAAGATGAGAAPAAAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family2.8e-3167.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I LLL EV GKDI ELIASGREKLASVPSGGG    +AP++G  GA AAPA   +KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTCGGGGCTGAGGTAGATGACGA
CAGAATTGGCTTGCTATTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTTCAATCGCCG
TTTCCGCCCCGGCCGCTGGTGCCACTGGTGCTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGT
TTCAGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTCTATTCTTAATTCAGTCGGGGCTGAGGTAGATGACGA
CAGAATTGGCTTGCTATTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTTCAATCGCCG
TTTCCGCCCCGGCCGCTGGTGCCACTGGTGCTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGT
TTCAGCCTCTTTGACTGA
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKSILNSVGAEVDDDRIGLLLSEVKGKDITELIASGREKLASVPSGGGSIAVSAPAAGATGAGAAPAAAEQKKEEKVEEKEESDDDMG
FSLFD