; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001322 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001322
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationChr09:16079316..16079999
RNA-Seq ExpressionHG10001322
SyntenyHG10001322
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]2.5e-8978.51Show/hide
Query:  MSTPRWSPPSNACPE------TLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFA
        MSTP  S PSNA PE      TLTQ NNQTDQLHFTDEDE+NLL  YLQI+RSENPTKNS  TLDSP  DR+QTA+GPKF+HS IADKLHRLKL YHKFA
Subjt:  MSTPRWSPPSNACPE------TLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV----DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTPI RKPQVISPSR+LSRRIKQRS +R   KEGV    DL NFPVLV EFS+ FPGNGVWRE +R MEEK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV----DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLQQQLR
        MNEKWVLLHIEGAELKARRA+LL+QQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLQQQLR

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]8.8e-7973.3Show/hide
Query:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI
        MSTP   PPSNA PETLT         HF++EDELNLLNCYLQIARS NPT NSQ TLDSP LDRI+TAL PKFT+SHIADKLHRLKLQYHK ARTKS I
Subjt:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI

Query:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHI
        KTPHHR+ILE+GR IWGK PT    KPQ I   R + RRIKQRS    S+K+GVDLN+FPVL+ EFSR FPGNGVW+E +RGMEEKSL+DMNEKWVLLHI
Subjt:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHI

Query:  EGAELKARRASLLQQQLRTTE
        E AELKARRA+LLQ+QLR  +
Subjt:  EGAELKARRASLLQQQLRTTE

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7368.4Show/hide
Query:  MSTPRWSPP-------SNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKF
        MSTPR SPP       S+A PE LTQS     Q+HFTDEDEL+LLNCYL++A S    KNSQ TLDSP LDRI TALG KF HSHIADKLHRLK+QYHKF
Subjt:  MSTPRWSPP-------SNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKF

Query:  ARTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNE
        ARTKSFIKTPHH +ILE+GR IWGK   P   KPQVI      SRRI+ RSV++   K+GVDL NFPVLV EFSR FPGNGVWRE ++GMEE SLK MNE
Subjt:  ARTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNE

Query:  KWVLLHIEGAELKARRASLLQQQLRTTETSE
        KWVLLHIE AELKARR +L+Q+Q+ TT+T +
Subjt:  KWVLLHIEGAELKARRASLLQQQLRTTETSE

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]1.7e-9379.13Show/hide
Query:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI
        MST   SPPS+A PETLTQSNNQ DQLHF DEDE+NLLN YLQI+RSENPTKNS  TLDS   DR+QTA+GPKF+HS IADKLHRLKL YHKFARTKSFI
Subjt:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI

Query:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEG----VDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWV
        KTPH RQIL+LGR IWGKSPTP+ RKPQVISPSR+LSRRIKQRS++R   KEG    VDL NFPVLV EFSR FPGNGVWR+ +R M EK+LKDMNEKWV
Subjt:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEG----VDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWV

Query:  LLHIEGAELKARRASLLQQQLRTTETSEDV
        LLHIEGAELKARRA+LL++QLRTTET+EDV
Subjt:  LLHIEGAELKARRASLLQQQLRTTETSEDV

XP_006424433.1 probable transcription factor At1g11510 [Citrus clementina]1.4e-3138.07Show/hide
Query:  FTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPI
        FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL+++YHK AR+KS IKTPH + + ++ + IWGK  T  
Subjt:  FTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPI

Query:  PRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASLLQQQ
         ++ + +  S           ++   +    +EG +L+ +PVL GE S+  P N VWRE ++ +    LK+MN+KW+L+ IE A++ +++A L+++Q
Subjt:  PRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASLLQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein8.0e-9479.13Show/hide
Query:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI
        MST   SPPS+A PETLTQSNNQ DQLHF DEDE+NLLN YLQI+RSENPTKNS  TLDS   DR+QTA+GPKF+HS IADKLHRLKL YHKFARTKSFI
Subjt:  MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFI

Query:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEG----VDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWV
        KTPH RQIL+LGR IWGKSPTP+ RKPQVISPSR+LSRRIKQRS++R   KEG    VDL NFPVLV EFSR FPGNGVWR+ +R M EK+LKDMNEKWV
Subjt:  KTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEG----VDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWV

Query:  LLHIEGAELKARRASLLQQQLRTTETSEDV
        LLHIEGAELKARRA+LL++QLRTTET+EDV
Subjt:  LLHIEGAELKARRASLLQQQLRTTETSEDV

A0A2H5MZL8 Uncharacterized protein3.3e-3136.16Show/hide
Query:  STPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFART
        STPR        P +   S N      FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL+++YHK AR+
Subjt:  STPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFART

Query:  KSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMN
        KS +KTPH + + ++ + IWGK  T   ++ + +  S           ++   +    +EG +L+ +PVL GE S+  P N VWRE ++ +    LK+MN
Subjt:  KSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMN

Query:  EKWVLLHIEGAELKARRASLLQQQ
        +KW+L+ IE A++ +++A L+++Q
Subjt:  EKWVLLHIEGAELKARRASLLQQQ

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like1.2e-8978.51Show/hide
Query:  MSTPRWSPPSNACPE------TLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFA
        MSTP  S PSNA PE      TLTQ NNQTDQLHFTDEDE+NLL  YLQI+RSENPTKNS  TLDSP  DR+QTA+GPKF+HS IADKLHRLKL YHKFA
Subjt:  MSTPRWSPPSNACPE------TLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV----DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTPI RKPQVISPSR+LSRRIKQRS +R   KEGV    DL NFPVLV EFS+ FPGNGVWRE +R MEEK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV----DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLQQQLR
        MNEKWVLLHIEGAELKARRA+LL+QQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLQQQLR

A0A6P5ZW34 probable transcription factor At1g617301.3e-3039.02Show/hide
Query:  PETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGR
        P   T  N ++ ++ F++ DE  +L C ++  +S +P     +T+ +PT++RI   L  +F+ S I DK+ RL+++YHK ARTKS ++T H R+I +L +
Subjt:  PETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGR

Query:  CIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV-DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASL
         IWGK  TP               ++ K+R  S     +GV DL+ FP LV EFSR+ P N VW+E M+G+EE+ LK M+++WVL+ +E A+L A++A L
Subjt:  CIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGV-DLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASL

Query:  LQQQL
        +Q+Q+
Subjt:  LQQQL

V4RSW9 Uncharacterized protein6.7e-3238.07Show/hide
Query:  FTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPI
        FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL+++YHK AR+KS IKTPH + + ++ + IWGK  T  
Subjt:  FTDEDELNLLNCYLQIAR-----SENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPI

Query:  PRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASLLQQQ
         ++ + +  S           ++   +    +EG +L+ +PVL GE S+  P N VWRE ++ +    LK+MN+KW+L+ IE A++ +++A L+++Q
Subjt:  PRKPQVISPSRVL----SRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASLLQQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGCCCCGCTGGTCACCGCCGTCCAACGCCTGTCCAGAAACCCTAACCCAATCCAACAATCAAACTGATCAACTCCATTTCACCGACGAAGATGAACTCAATCT
CCTGAATTGCTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAGTCCACTCTCGATTCTCCGACTTTGGACCGCATCCAGACCGCCCTCGGCCCCAAAT
TCACCCACTCCCACATCGCCGATAAGCTCCACCGGCTCAAACTCCAGTACCACAAATTCGCAAGAACCAAGTCCTTCATCAAGACGCCCCACCACCGTCAGATCCTCGAG
CTCGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATACCAAGAAAACCACAGGTAATTTCACCTTCACGAGTACTTTCACGCAGAATCAAACAAAGGTCAGTCTCGAG
ACTCTCAACAAAAGAAGGGGTTGATCTGAATAACTTTCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCGGGAAATGGGGTGTGGAGAGAGGTGATGAGGGGAATGG
AAGAGAAGAGTTTGAAGGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAGGCAAGAAGGGCTTCATTATTACAGCAGCAACTTAGAACTACA
GAGACTTCTGAAGATGTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAACGCCCCGCTGGTCACCGCCGTCCAACGCCTGTCCAGAAACCCTAACCCAATCCAACAATCAAACTGATCAACTCCATTTCACCGACGAAGATGAACTCAATCT
CCTGAATTGCTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAGTCCACTCTCGATTCTCCGACTTTGGACCGCATCCAGACCGCCCTCGGCCCCAAAT
TCACCCACTCCCACATCGCCGATAAGCTCCACCGGCTCAAACTCCAGTACCACAAATTCGCAAGAACCAAGTCCTTCATCAAGACGCCCCACCACCGTCAGATCCTCGAG
CTCGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATACCAAGAAAACCACAGGTAATTTCACCTTCACGAGTACTTTCACGCAGAATCAAACAAAGGTCAGTCTCGAG
ACTCTCAACAAAAGAAGGGGTTGATCTGAATAACTTTCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCGGGAAATGGGGTGTGGAGAGAGGTGATGAGGGGAATGG
AAGAGAAGAGTTTGAAGGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAGGCAAGAAGGGCTTCATTATTACAGCAGCAACTTAGAACTACA
GAGACTTCTGAAGATGTGAAATAG
Protein sequenceShow/hide protein sequence
MSTPRWSPPSNACPETLTQSNNQTDQLHFTDEDELNLLNCYLQIARSENPTKNSQSTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLQYHKFARTKSFIKTPHHRQILE
LGRCIWGKSPTPIPRKPQVISPSRVLSRRIKQRSVSRLSTKEGVDLNNFPVLVGEFSRLFPGNGVWREVMRGMEEKSLKDMNEKWVLLHIEGAELKARRASLLQQQLRTT
ETSEDVK