CuGenDBv2

Gene ID	HG10001335
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	Chr09:16190205..16190845
RNA-Seq Expression	HG10001335
Synteny	HG10001335
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KGN46888.2 hypothetical protein Csa_020864 [Cucumis sativus]

4.1e-41

92.63

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAETVSEILEGEM RITISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYGV S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

6.3e-42

93.68

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAET SEILEGEMFR+TISKPKNGNAQHSRVV VVPLSSGFQPAI RLRELYG +S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

4.1e-41

89.69

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

4.1e-41

89.69

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

3.3e-43

95.79

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        MSIATD+KVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVV VVPLSSGFQPAIFRLRELYG +S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEN7 Uncharacterized protein

1.7e-40

93.48

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYG
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAETVSEILEGEM RITISKPKNGNAQHSRVV +VPLSS FQPAI RLRELYG
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYG

A0A6J1CHW5 uncharacterized protein LOC111011075

3.0e-42

93.68

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS
        MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAET SEILEGEMFR+TISKPKNGNAQHSRVV VVPLSSGFQPAI RLRELYG +S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRS

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

2.0e-41

89.69

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

2.0e-41

89.69

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

2.0e-41

89.69

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS
        MSIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHPFAAE VSEILEGEMFR+TISKPKNGNAQHSRVV +VPLSSGFQPAI RLRELYG+   S
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.7e-29

65.56

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Query:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLREL
        MSIATD  V+TVICFDRAA VLFGCSADEFF F KL+P AA  V+++ +GEM R+T+++P+N NAQH RV  VVPL SG QPAI  LR++
Subjt:  MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLREL

Sequences

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CDS sequence

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ATGTCAATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACA
TCCTTTTGCTGCTGAAACTGTAAGTGAAATTCTGGAAGGGGAGATGTTTAGAATCACAATCTCTAAACCGAAGAATGGCAATGCACAACACTCAAGAGTTGTCCATGTTG
TTCCTCTGAGTTCAGGTTTTCAGCCAGCAATTTTTAGACTCAGGGAATTGTATGGGGTAAGAAGCTGCTCTTAA

mRNA sequence

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Protein sequence

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MSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETVSEILEGEMFRITISKPKNGNAQHSRVVHVVPLSSGFQPAIFRLRELYGVRSCS

HG10001335 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome