; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10001341 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10001341
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L18
Genome locationChr09:16231606..16231992
RNA-Seq ExpressionHG10001341
SyntenyHG10001341
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]6.3e-5893.8Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ
        AIVNSLKNNGVKLILD+NV DDAA+S+YQ
Subjt:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]2.2e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVNSLKNNGVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]2.8e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVNSLKNNGVKLILD+N DDA R SY+
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]2.8e-5893.75Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVNSLKNNGVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.4e-6096.88Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHAD+NKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVN+LKNNGVKLILD+NVDDA+RSSYQ
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

TrEMBL top hitse value%identityAlignment
A0A1S4E442 uncharacterized protein LOC1035015011.2e-5793.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ
        AIVNSLKNNGVKLIL++NV DDAA+S+YQ
Subjt:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ

A0A5A7SM55 50S ribosomal protein L181.2e-5793.02Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ
        AIVNSLKNNGVKLIL++NV DDAA+S+YQ
Subjt:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ

A0A5D3C2Z2 50S ribosomal protein L183.1e-5893.8Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGF+NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ
        AIVNSLKNNGVKLILD+NV DDAA+S+YQ
Subjt:  AIVNSLKNNGVKLILDDNV-DDAARSSYQ

A0A6J1FXG0 uncharacterized protein LOC1114484601.1e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVNSLKNNGVKLILD+N DDA+R SY+
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

A0A6J1JBQ5 uncharacterized protein LOC1114836101.4e-5894.53Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIH DINKEIEKKGFKNRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDDAARSSYQ
        AIVNSLKNNGVKLILD+N DDA R SY+
Subjt:  AIVNSLKNNGVKLILDDNVDDAARSSYQ

SwissProt top hitse value%identityAlignment
A1KRI9 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

A9M3V0 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q5F5U3 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q7DDT0 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Q9JQQ6 50S ribosomal protein L188.4e-0529.63Show/hide
Query:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV
        LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +A + K  G+E+              ++ GF+   ++ A+ 
Subjt:  LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIV

Query:  NSLKNNGV
         + + NG+
Subjt:  NSLKNNGV

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein7.7e-5483.47Show/hide
Query:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW
        MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VGEVLAMRLKV+GL+ GQGRGIHAD+ KEIEKKGFK+RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIW

Query:  AIVNSLKNNGVKLILDDNVDD
        A++NSL+NNGV LILDD+ DD
Subjt:  AIVNSLKNNGVKLILDDNVDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTAGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCGTGTAATGCTAAGGCAGCAGCAGTTGTCGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTTGAAC
AGGGGCAAGGAAGAGGGATTCACGCAGACATAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCTCTCAAGAATAACGGA
GTTAAACTTATACTCGACGACAATGTCGATGATGCAGCTCGGTCGAGCTATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCTAATGTAGTAGATAGAAACAATGGACGGATTGTTGCAACTGCGTCCACAGT
TGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCGTGTAATGCTAAGGCAGCAGCAGTTGTCGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTTGAAC
AGGGGCAAGGAAGAGGGATTCACGCAGACATAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACAAAAATCTGGGCTATAGTGAACTCTCTCAAGAATAACGGA
GTTAAACTTATACTCGACGACAATGTCGATGATGCAGCTCGGTCGAGCTATCAATAA
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFKNRTKIWAIVNSLKNNG
VKLILDDNVDDAARSSYQ