CuGenDBv2

Gene ID	HG10001362
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	exosome complex component RRP41-like
Genome location	Chr09:16397102..16398128
RNA-Seq Expression	HG10001362
Synteny	HG10001362
Gene Ontology terms	GO:0009845 - seed germination (biological process) GO:0016075 - rRNA catabolic process (biological process) GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process) GO:0034475 - U4 snRNA 3'-end processing (biological process) GO:0071028 - nuclear mRNA surveillance (biological process) GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0000176 - nuclear exosome (RNase complex) (cellular component) GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component) GO:0005730 - nucleolus (cellular component) GO:0008408 - 3'-5' exonuclease activity (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001247 - Exoribonuclease, phosphorolytic domain 1 IPR020568 - Ribosomal protein S5 domain 2-type fold IPR027408 - PNPase/RNase PH domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-31

93.24

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

KAG7010638.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-31

93.24

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]

1.7e-31

93.24

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]

5.9e-32

94.59

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

XP_023534485.1 exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo]

2.2e-31

93.24

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEK6 Uncharacterized protein

1.8e-31

91.89

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATPTT TYSPSPT+HKTRP +FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

A0A1S3CKF3 exosome complex component RRP41-like

5.4e-31

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Query:  MAKKATP-TTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP TT TYSPSPT+HKTRPP+FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATP-TTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

A0A6J1CHT0 exosome complex component RRP41-like

2.4e-31

91.89

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T TYSPSPTIHKTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

A0A6J1FYV1 exosome complex component RRP41-like

8.3e-32

93.24

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

A0A6J1JDA9 exosome complex component RRP41-like

2.8e-32

94.59

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

SwissProt top hits

e value

%identity

Alignment

A2RVK7 Exosome complex component RRP41-like

4.1e-20

66.22

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

Q97BZ5 Exosome complex component Rrp41

2.4e-04

41.82

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Query:  KTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        KT     +  + D +R DGR+F++ RP     G +N A GSAY E+G  K+IV V
Subjt:  KTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

Q9HIP2 Exosome complex component Rrp41

5.4e-04

46.51

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Query:  DWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        D +R DGR+F++ RP   + G +N A GSAY E+G  K++V V
Subjt:  DWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

Arabidopsis top hits

e value

%identity

Alignment

AT4G27490.1 3'-5'-exoribonuclease family protein

2.9e-21

66.22

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Query:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV
        MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSV
Subjt:  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

Sequences

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CDS sequence

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ATGGCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGA
TGGCCGAGCCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTG
TGTAA

mRNA sequence

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Protein sequence

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MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

HG10001362 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome